gli1 (Tetraodon nigroviridis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSTNIG00000007058 T112005_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Gli3
M01022_2.00
Mus musculus
NGACCACCCNN

NNGGGTGGTCN
PBM
Peterson et al.(2012)
Gli3
0.822 0.948
Gli3
M08023_2.00
Mus musculus
RGVCCACCCAS

STGGGTGGBCY
ChIP-seq
Chen et al.(2011)
GSE11062_Gli3
0.822 0.948
Gli3
M09512_2.00
Mus musculus
RGACCACCCASR

YSTGGGTGGTCY
Misc
Heinz et al.(2010)
Limb-GLI3_GSE11077
0.822 0.948
GLI3
M04416_2.00
Homo sapiens
VGACCACCCACVNHG

CDNBGTGGGTGGTCB
SELEX
Yin et al.(2017)
GLI3_eDBD_HT-SELEX
0.776 0.939
GLI3
M02642_2.00
Homo sapiens
GACCACCCANK

MNTGGGTGGTC
SELEX
Hallikas et al.(2006)
GLI3
0.776 0.939
GLI3
M08875_2.00
Homo sapiens
VRACCACCCAV

BTGGGTGGTYB
Misc
Kulakovskiy et al.(2013)
GLI3_HUMAN.H11MO.0.B
0.776 0.939
GLI3
M10167_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI3_01
0.776 0.939
GLI3
M10168_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI3_Q5_01
0.776 0.939
GLI3
M04417_2.00
Homo sapiens
CWHBGTGGGTGGTCY

RGACCACCCACVDWG
SELEX
Yin et al.(2017)
GLI3_eDBD_Methyl-HT-SELEX
0.776 0.939
Gli2
M01024_2.00
Mus musculus
NGACCACCYN

NRGGTGGTCN
PBM
Peterson et al.(2012)
Gli2
0.759 0.913
GLI2
M02875_2.00
Homo sapiens
GMCCACMCANVNHB

VDNBNTGKGTGGKC
SELEX
Jolma et al.(2013)
GLI2_1
0.759 0.913
GLI2
M02876_2.00
Homo sapiens
GCGACCACVCWR

YWGBGTGGTCGC
SELEX
Jolma et al.(2013)
GLI2_2
0.759 0.913
GLI2
M02732_2.00
Homo sapiens
GACCACMCAN

NTGKGTGGTC
SELEX
Jolma et al.(2010)
GLI2_monomer
0.759 0.913
GLI2
M04402_2.00
Homo sapiens
VGACCACCCACVDHG

CDHBGTGGGTGGTCB
SELEX
Yin et al.(2017)
GLI2_eDBD_HT-SELEX
0.759 0.913
GLI2
M02641_2.00
Homo sapiens
GACCACCCAHG

CDTGGGTGGTC
SELEX
Hallikas et al.(2006)
GLI2
0.759 0.913
GLI2
M10114_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI2_Q3
0.759 0.913
GLI2
M10115_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI2_Q6
0.759 0.913
GLI2
M04403_2.00
Homo sapiens
RGACCACCCACVWWG

CWWBGTGGGTGGTCY
SELEX
Yin et al.(2017)
GLI2_eDBD_Methyl-HT-SELEX
0.759 0.913
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000009858 C2H2 ZF 319 344
ENSTNIP00000009858 C2H2 ZF 352 379
ENSTNIP00000009858 C2H2 ZF 385 409
ENSTNIP00000009858 C2H2 ZF 415 440
ENSTNIP00000009858 C2H2 ZF 446 471

Links

Other C2H2 ZF family TFs
Other Tetraodon nigroviridis TFs

138 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
gli1 Gasterosteus aculeatus ENSGACG00000006458 I 0.825
gli1 Takifugu rubripes ENSTRUG00000014998 I 0.825
ENSGMOG00000007975 Gadus morhua ENSGMOG00000007975 I 0.825
ENSONIG00000005084 Oreochromis niloticus ENSONIG00000005084 I 0.823
ENSXMAG00000017965 Xiphophorus maculatus ENSXMAG00000017965 I 0.823
gli1 Oryzias latipes ENSORLG00000005455 I 0.823
ENSPFOG00000006269 Poecilia formosa ENSPFOG00000006269 I 0.823
GLI3 Cavia porcellus ENSCPOG00000013233 I 0.822
ENSSTOG00000020844 Ictidomys tridecemlineatus ENSSTOG00000020844 I 0.822
Gli3 Mus musculus ENSMUSG00000021318 D 0.822
Gli3 Rattus norvegicus ENSRNOG00000014395 I 0.822
ENSPFOG00000014778 Poecilia formosa ENSPFOG00000014778 I 0.817
ENSONIG00000003608 Oreochromis niloticus ENSONIG00000003608 I 0.817
ENSLOCG00000002028 Lepisosteus oculatus ENSLOCG00000002028 I 0.815
ENSONIG00000004472 Oreochromis niloticus ENSONIG00000004472 I 0.815
ENSGMOG00000010335 Gadus morhua ENSGMOG00000010335 I 0.812
gli2a Danio rerio ENSDARG00000025641 I 0.811
gli2.L Xenopus laevis XB-GENE-17342592 I 0.811
gli2.S Xenopus laevis XB-GENE-6251939 I 0.810
fgenesh2_pg.scaffold_137000068 Branchiostoma floridae fgenesh2_pg.scaffold_137000068 I 0.806
fgenesh2_pg.scaffold_169000072 Branchiostoma floridae fgenesh2_pg.scaffold_169000072 I 0.806
gli2b Gasterosteus aculeatus ENSGACG00000001547 I 0.805
gli2b Takifugu rubripes ENSTRUG00000001954 I 0.805
ENSAMXG00000017236 Astyanax mexicanus ENSAMXG00000017236 I 0.781
GLI1 Anolis carolinensis ENSACAG00000006541 I 0.779
Pvit_05813 Pogona vitticeps Pvit_05813 I 0.779
ENSLOCG00000005938 Lepisosteus oculatus ENSLOCG00000005938 I 0.779
ENSMPUG00000018143 Mustela putorius furo ENSMPUG00000018143 I 0.776
GLI3 Otolemur garnettii ENSOGAG00000012651 I 0.776
GLI3 Monodelphis domestica ENSMODG00000002714 I 0.776
ENSPANG00000014545 Papio anubis ENSPANG00000014545 I 0.776
ENSNLEG00000003160 Nomascus leucogenys ENSNLEG00000003160 I 0.776
GLI3 Ornithorhynchus anatinus ENSOANG00000010699 I 0.776
GLI3 Oryctolagus cuniculus ENSOCUG00000006563 I 0.776
GLI3 Ochotona princeps ENSOPRG00000011225 I 0.776
ENSSHAG00000009727 Sarcophilus harrisii ENSSHAG00000009727 I 0.776
ENSP00000379258 Macaca fascicularis ENSP00000379258 I 0.776
Cmyd_10007839 Chelonia mydas Cmyd_10007839 I 0.776
Brh_R008256 Buceros rhinoceros Brh_R008256 I 0.776
Gfo_R007869 Geospiza fortis Gfo_R007869 I 0.776
Pvit_19093 Pogona vitticeps Pvit_19093 I 0.776
XP_002933450 Xenopus tropicalis XP_002933450 I 0.776
XP_002933449 Xenopus tropicalis XP_002933449 I 0.776
gli3.L Xenopus laevis XB-GENE-865509 I 0.776
Afo_R007816 Aptenodytes forsteri Afo_R007816 I 0.776
Aan_R014715 Calypte anna Aan_R014715 I 0.776
GLI3 Pan troglodytes ENSPTRG00000019117 I 0.776
ENSPSIG00000017804 Pelodiscus sinensis ENSPSIG00000017804 I 0.776
ENSPPYG00000017613 Pongo abelii ENSPPYG00000017613 I 0.776
GLI3 Pteropus vampyrus ENSPVAG00000015920 I 0.776
GLI3 Macaca mulatta ENSMMUG00000013614 I 0.776
GLI3 Tursiops truncatus ENSTTRG00000003628 I 0.776
ENSTSYG00000009406 Tarsius syrichta ENSTSYG00000009406 I 0.776
GLI3 Tupaia belangeri ENSTBEG00000006673 I 0.776
GLI3 Procavia capensis ENSPCAG00000015092 I 0.776
ENSOARG00000017420 Ovis aries ENSOARG00000017420 I 0.776
GLI3 Loxodonta africana ENSLAFG00000008944 I 0.776
GLI3 Canis familiaris ENSCAFG00000003535 I 0.776
ENSFALG00000005113 Ficedula albicollis ENSFALG00000005113 I 0.776
GLI3 Equus caballus ENSECAG00000009281 I 0.776
GLI3 Felis catus ENSFCAG00000011989 I 0.776
ENSLACG00000017364 Latimeria chalumnae ENSLACG00000017364 I 0.776
ENSAPLG00000004361 Anas platyrhynchos ENSAPLG00000004361 I 0.776
ENSGALG00000012329 Gallus gallus ENSGALG00000012329 I 0.776
GLI3 Gorilla gorilla ENSGGOG00000002026 I 0.776
GLI3 Dasypus novemcinctus ENSDNOG00000049286 I 0.776
ENSMEUG00000013134 Macropus eugenii ENSMEUG00000013134 I 0.776
GLI3 Anolis carolinensis ENSACAG00000017547 I 0.776
GLI3 Callithrix jacchus ENSCJAG00000007690 I 0.776
GLI3 Choloepus hoffmanni ENSCHOG00000003774 I 0.776
GLI3 Myotis lucifugus ENSMLUG00000015711 I 0.776
GLI3 Homo sapiens ENSG00000106571 D 0.776
GLI3 Meleagris gallopavo ENSMGAG00000012277 I 0.776
GLI3 Bos taurus ENSBTAG00000010671 I 0.776
ENSCSAG00000015361 Chlorocebus sabaeus ENSCSAG00000015361 I 0.776
ENSAMEG00000008405 Ailuropoda melanoleuca ENSAMEG00000008405 I 0.776
Gfo_R013682 Geospiza fortis Gfo_R013682 I 0.774
Tal_R009020 Tyto alba Tal_R009020 I 0.774
ENSAPLG00000005128 Anas platyrhynchos ENSAPLG00000005128 I 0.774
gli3 Danio rerio ENSDARG00000052131 I 0.773
ENSAMXG00000002477 Astyanax mexicanus ENSAMXG00000002477 I 0.773
Afo_R006826 Aptenodytes forsteri Afo_R006826 I 0.771
GLI2 Meleagris gallopavo ENSMGAG00000011872 I 0.771
GLI2 Taeniopygia guttata ENSTGUG00000004599 I 0.771
ENSAPLG00000015141 Anas platyrhynchos ENSAPLG00000015141 I 0.771
Gfo_R001212 Geospiza fortis Gfo_R001212 I 0.771
Aan_R003640 Calypte anna Aan_R003640 I 0.771
ENSPSIG00000008752 Pelodiscus sinensis ENSPSIG00000008752 I 0.771
Brh_R010932 Buceros rhinoceros Brh_R010932 I 0.771
GLI2 Gallus gallus ENSGALG00000011630 I 0.771
gli1 Danio rerio ENSDARG00000101244 I 0.771
Tal_R006208 Tyto alba Tal_R006208 I 0.771
ENSFALG00000013217 Ficedula albicollis ENSFALG00000013217 I 0.771
Cmyd_10009086 Chelonia mydas Cmyd_10009086 I 0.771
ENSPFOG00000005116 Poecilia formosa ENSPFOG00000005116 I 0.770
ENSXMAG00000006443 Xiphophorus maculatus ENSXMAG00000006443 I 0.770
gli2b Danio rerio ENSDARG00000020884 I 0.768
GLI2 Anolis carolinensis ENSACAG00000004133 I 0.768
ENSAMXG00000003125 Astyanax mexicanus ENSAMXG00000003125 I 0.768
Pvit_06470 Pogona vitticeps Pvit_06470 I 0.768
gli2b Takifugu rubripes ENSTRUG00000010444 I 0.768
ENSAMXG00000006646 Astyanax mexicanus ENSAMXG00000006646 I 0.768
Ogr02489 Ophisaurus gracilis Ogr02489 I 0.768
ENSLOCG00000011983 Lepisosteus oculatus ENSLOCG00000011983 I 0.766
ENSMGAG00000003540 Meleagris gallopavo ENSMGAG00000003540 I 0.765
ENSGALG00000014639 Gallus gallus ENSGALG00000014639 I 0.765
GLI2 Otolemur garnettii ENSOGAG00000032438 I 0.764
GLI2 Monodelphis domestica ENSMODG00000000245 I 0.761
ENSSHAG00000004233 Sarcophilus harrisii ENSSHAG00000004233 I 0.761
GLI3 Microcebus murinus ENSMICG00000010785 I 0.760
GLI3 Echinops telfairi ENSETEG00000003955 I 0.760
ENSAMEG00000008708 Ailuropoda melanoleuca ENSAMEG00000008708 I 0.759
GLI2 Bos taurus ENSBTAG00000011682 I 0.759
Myotis_brandtii_Gli2_10019076 Myotis brandtii Myotis_brandtii_Gli2_10019076 I 0.759
ENSMMUP00000002494 Macaca fascicularis ENSMMUP00000002494 I 0.759
ENSP00000390436-D1 Bos grunniens ENSP00000390436-D1 I 0.759
GLI2 Sus scrofa ENSSSCG00000015733 I 0.759
ENSPANG00000024168 Papio anubis ENSPANG00000024168 I 0.759
GLI2 Homo sapiens ENSG00000074047 D 0.759
GLI2 Felis catus ENSFCAG00000014531 I 0.759
ENSPPYG00000012778 Pongo abelii ENSPPYG00000012778 I 0.759
GLI2 Oryctolagus cuniculus ENSOCUG00000000638 I 0.759
ENSOARG00000013052 Ovis aries ENSOARG00000013052 I 0.759
ENSMPUG00000000986 Mustela putorius furo ENSMPUG00000000986 I 0.759
Gli2 Mus musculus ENSMUSG00000048402 D 0.759
ENSNLEG00000000944 Nomascus leucogenys ENSNLEG00000000944 I 0.759
GLI2 Canis familiaris ENSCAFG00000004821 I 0.759
GLI2 Pan troglodytes ENSPTRG00000012413 I 0.759
ENSCSAG00000016668 Chlorocebus sabaeus ENSCSAG00000016668 I 0.759
GLI2 Cavia porcellus ENSCPOG00000015189 I 0.759
ENSCJAG00000013342 Callithrix jacchus ENSCJAG00000013342 I 0.759
gli2b Tetraodon nigroviridis ENSTNIG00000017828 I 0.759
ENSSTOG00000004582 Ictidomys tridecemlineatus ENSSTOG00000004582 I 0.759
GLI2 Dasypus novemcinctus ENSDNOG00000008730 I 0.759
Gli2 Rattus norvegicus ENSRNOG00000007261 I 0.759
GLI2 Macaca mulatta ENSMMUG00000001868 I 0.759
GLI2 Procavia capensis ENSPCAG00000001704 I 0.756
gli2b Tetraodon nigroviridis ENSTNIG00000010251 I 0.756