CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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si:ch211-117k10.3
(
Tetraodon nigroviridis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSTNIG00000007382
T112010_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
KLF15
M04511_2.00
Homo sapiens
VHCMCVCCCMYN
NRKGGGBGKGDB
SELEX
Yin et al.(2017)
KLF15_eDBD_HT-SELEX
0.776
0.826
KLF15
M04513_2.00
Homo sapiens
VMCMCDCCCMCH
DGKGGGHGKGKB
SELEX
Yin et al.(2017)
KLF15_FL_HT-SELEX
0.776
0.826
KLF15
M08323_2.00
Homo sapiens
SSCYNBCYCCDCCYC
GRGGHGGRGVNRGSS
ChIP-seq
Schmitges et al.(2016)
Q9UIH9.MEME
0.776
0.826
KLF15
M08907_2.00
Homo sapiens
CCNYYCCYNBCYCCKCCYY
RRGGMGGRGVNRGGRRNGG
Misc
Kulakovskiy et al.(2013)
KLF15_HUMAN.H11MO.0.A
0.776
0.826
Klf15
M08987_2.00
Mus musculus
CCNYYCCYNBCYCCKCCYY
RRGGMGGRGVNRGGRRNGG
Misc
Kulakovskiy et al.(2013)
KLF15_MOUSE.H11MO.0.A
0.776
0.826
KLF15
M10241_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$KLF15_Q2
0.776
0.826
KLF15
M04512_2.00
Homo sapiens
RCCMCGCCCMCH
DGKGGGCGKGGY
SELEX
Yin et al.(2017)
KLF15_eDBD_Methyl-HT-SELEX
0.776
0.826
KLF15
M04514_2.00
Homo sapiens
GCCMCGCCCMCN
NGKGGGCGKGGC
SELEX
Yin et al.(2017)
KLF15_FL_Methyl-HT-SELEX
0.776
0.826
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTNIP00000010187
C2H2 ZF
227
251
HKCSHPGCGKMYTKSSHLKAHFRRH
ENSTNIP00000010187
C2H2 ZF
257
282
YTCSWPECGWSRFSRSDELSRHRRSH
ENSTNIP00000010187
C2H2 ZF
288
310
YECSLCEKKFARSDHLSKHTKVH
ENSTNIP00000010188
C2H2 ZF
202
226
HKCSHPGCGKMYTKSSHLKAHFRRH
ENSTNIP00000010188
C2H2 ZF
232
257
YTCSWPECGWSRFSRSDELSRHRRSH
ENSTNIP00000010188
C2H2 ZF
263
285
YECSLCEKKFARSDHLSKHTKVH
Links
Other
C2H2 ZF
family TFs
Other
Tetraodon nigroviridis
TFs
82 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy