znf143b (Tetraodon nigroviridis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSTNIG00000013739 T112098_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ZNF143
M02899_2.00
Homo sapiens
YWCCCAYAATGCAYYG

CRRTGCATTRTGGGWR
SELEX
Jolma et al.(2013)
ZNF143_1
0.814 0.919
ZNF143
M07931_2.00
Homo sapiens
RACTACAWYTCCCAG

CTGGGARWTGTAGTY
ChIP-seq
Gerstein et al.(2012)
GM12878_ZNF143_Stanford
0.814 0.919
ZNF143
M08910_2.00
Homo sapiens
RRACTACAWYTCCCAGVRKSCH

DGSMYBCTGGGARWTGTAGTYY
Misc
Kulakovskiy et al.(2013)
ZN143_HUMAN.H11MO.0.A
0.814 0.919
ZNF143
M09510_2.00
Homo sapiens
NNYTCCCAKVAKSCH

DGSMTBMTGGGARNN
Misc
Heinz et al.(2010)
CUTLL-ZNF143_GSE29600
0.814 0.919
ZNF143
M10247_2.00
Homo sapiens
NYYWCCCABMATGCAHYRCRNB

VNYGYRDTGCATKVTGGGWRRN
Transfac
Matys et al.(2006)
V$STAF_01
0.814 0.919
ZNF143
M10248_2.00
Homo sapiens
MHBWCCCAKVRTBCMWHGMRV

BYKCDWKGVAYBMTGGGWVDK
Transfac
Matys et al.(2006)
V$STAF_02
0.814 0.919
ZNF143
M10249_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$STAF_Q4_01
0.814 0.919
Zfp143
M09010_2.00
Mus musculus
RRACTACAWYTCCCAGVRKSCH

DGSMYBCTGGGARWTGTAGTYY
Misc
Kulakovskiy et al.(2013)
ZN143_MOUSE.H11MO.0.A
0.813 0.919
ZNF76
M04398_2.00
Homo sapiens
NNHWCCCABAATGCAHYRCRN

NYGYRDTGCATTVTGGGWDNN
SELEX
Yin et al.(2017)
ZNF76_eDBD_HT-SELEX
0.766 0.826
ZNF76
M08278_2.00
Homo sapiens
BCSCRNDGSMTBCTGGGARNT

ANYTCCCAGVAKSCHNYGSGV
ChIP-seq
Schmitges et al.(2016)
P36508_1-7.RCADE
0.766 0.826
ZNF76
M08856_2.00
Homo sapiens
ACTMCMHYTCCCAGVRKSCHHY

RDDGSMYBCTGGGARDKGKAGT
Misc
Kulakovskiy et al.(2013)
ZNF76_HUMAN.H11MO.0.C
0.766 0.826
ZNF76
M04399_2.00
Homo sapiens
NYTWCCCAYAATGCAHYRCDN

NHGYRDTGCATTRTGGGWARN
SELEX
Yin et al.(2017)
ZNF76_eDBD_Methyl-HT-SELEX
0.766 0.826
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000016741 C2H2 ZF 235 259
ENSTNIP00000016741 C2H2 ZF 265 289
ENSTNIP00000016741 C2H2 ZF 295 319
ENSTNIP00000016741 C2H2 ZF 325 349
ENSTNIP00000016741 C2H2 ZF 355 379
ENSTNIP00000016741 C2H2 ZF 385 409
ENSTNIP00000016741 C2H2 ZF 415 438

Links

Other C2H2 ZF family TFs
Other Tetraodon nigroviridis TFs

114 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
znf143 Takifugu rubripes ENSTRUG00000009324 I 0.827
ENSPFOG00000008911 Poecilia formosa ENSPFOG00000008911 I 0.826
ENSXMAG00000005152 Xiphophorus maculatus ENSXMAG00000005152 I 0.826
ENSONIG00000015524 Oreochromis niloticus ENSONIG00000015524 I 0.819
ENSGMOG00000001888 Gadus morhua ENSGMOG00000001888 I 0.819
ENSAMXG00000003833 Astyanax mexicanus ENSAMXG00000003833 I 0.817
znf143b Danio rerio ENSDARG00000041581 I 0.817
ENSLOCG00000003619 Lepisosteus oculatus ENSLOCG00000003619 I 0.817
znf143 Xenopus tropicalis XB-GENE-1012504 I 0.816
AAH73068 Xenopus laevis AAH73068 I 0.816
ZNF143 Monodelphis domestica ENSMODG00000007909 I 0.814
znf143b Gasterosteus aculeatus ENSGACG00000009776 I 0.814
ZNF143 Loxodonta africana ENSLAFG00000004487 I 0.814
ZNF143 Microcebus murinus ENSMICG00000004353 I 0.814
ZNF143 Macaca mulatta ENSMMUG00000008758 I 0.814
ENSMPUG00000012796 Mustela putorius furo ENSMPUG00000012796 I 0.814
ENSPPYG00000003495 Pongo abelii ENSPPYG00000003495 I 0.814
Alligator_sinensis_CCG018668.1 Alligator sinensis Alligator_sinensis_CCG018668.1 I 0.814
ENSP00000379847 Macaca fascicularis ENSP00000379847 I 0.814
znf143.S Xenopus laevis XB-GENE-1012509 I 0.814
ENSTSYG00000004324 Tarsius syrichta ENSTSYG00000004324 I 0.814
ZNF143 Pan troglodytes ENSPTRG00000003349 I 0.814
ZNF143 Homo sapiens ENSG00000166478 D 0.814
ENSPSIG00000009683 Pelodiscus sinensis ENSPSIG00000009683 I 0.814
ENSPANG00000002501 Papio anubis ENSPANG00000002501 I 0.814
ZNF143 Otolemur garnettii ENSOGAG00000011518 I 0.814
ZNF143 Callithrix jacchus ENSCJAG00000011327 I 0.814
ZNF143 Cavia porcellus ENSCPOG00000003109 I 0.814
ZNF143 Equus caballus ENSECAG00000018889 I 0.814
ZNF143 Erinaceus europaeus ENSEEUG00000000955 I 0.814
ZNF143 Canis familiaris ENSCAFG00000007373 I 0.814
ZNF143 Felis catus ENSFCAG00000002342 I 0.814
ENSAMEG00000003872 Ailuropoda melanoleuca ENSAMEG00000003872 I 0.814
ZNF143 Ochotona princeps ENSOPRG00000005466 I 0.813
ZNF143 Anolis carolinensis ENSACAG00000009338 I 0.813
ENSAPLG00000002385 Anas platyrhynchos ENSAPLG00000002385 I 0.813
Zfp143 Mus musculus ENSMUSG00000061079 D 0.813
ZNF143 Sorex araneus ENSSARG00000007780 I 0.813
Brh_R005520 Buceros rhinoceros Brh_R005520 I 0.813
Gfo_R011843 Geospiza fortis Gfo_R011843 I 0.813
Afo_R014591 Aptenodytes forsteri Afo_R014591 I 0.813
ENSTGUG00000008153 Taeniopygia guttata ENSTGUG00000008153 I 0.813
Zfp143 Rattus norvegicus ENSRNOG00000010087 I 0.813
Aan_R006576 Calypte anna Aan_R006576 I 0.813
ZNF143 Oryctolagus cuniculus ENSOCUG00000005226 I 0.813
Tal_R001092 Tyto alba Tal_R001092 I 0.813
ZNF143 Myotis lucifugus ENSMLUG00000000213 I 0.813
ZNF143 Gallus gallus ENSGALG00000005787 I 0.813
ZNF143 Meleagris gallopavo ENSMGAG00000006206 I 0.813
ENSFALG00000000985 Ficedula albicollis ENSFALG00000000985 I 0.813
ENSMEUG00000003014 Macropus eugenii ENSMEUG00000003014 I 0.813
znf143b Oryzias latipes ENSORLG00000001130 I 0.812
ZNF143 Tursiops truncatus ENSTTRG00000015353 I 0.811
ENSP00000379847-D1 Bos grunniens ENSP00000379847-D1 I 0.811
ENSOARG00000012477 Ovis aries ENSOARG00000012477 I 0.811
Ogr18895 Ophisaurus gracilis Ogr18895 I 0.811
ZNF143 Ornithorhynchus anatinus ENSOANG00000005853 I 0.810
ENSCSAG00000004520 Chlorocebus sabaeus ENSCSAG00000004520 I 0.809
Pvit_03784 Pogona vitticeps Pvit_03784 I 0.806
ENSSTOG00000009647 Ictidomys tridecemlineatus ENSSTOG00000009647 I 0.806
Myotis_brandtii_ZNF143_10021171 Myotis brandtii Myotis_brandtii_ZNF143_10021171 I 0.803
ENSLACG00000017669 Latimeria chalumnae ENSLACG00000017669 I 0.802
ENSLOCG00000011655 Lepisosteus oculatus ENSLOCG00000011655 I 0.780
Sakowv30044960m.g Saccoglossus kowalevskii Sakowv30044960m.g I 0.776
Sakowv30036637m.g Saccoglossus kowalevskii Sakowv30036637m.g I 0.776
znf76 Danio rerio ENSDARG00000013279 I 0.775
Ocbimv22038914m.g Octopus bimaculoides Ocbimv22038914m.g I 0.771
Alligator_sinensis_CCG020455.1 Alligator sinensis Alligator_sinensis_CCG020455.1 I 0.769
SMAR015659 Strigamia maritima SMAR015659 I 0.769
LotgiG222832 Lottia gigantea LotgiG222832 I 0.769
Cmyd_10011173 Chelonia mydas Cmyd_10011173 I 0.767
Afo_R002092 Aptenodytes forsteri Afo_R002092 I 0.767
ENSPSIG00000005652 Pelodiscus sinensis ENSPSIG00000005652 I 0.767
ZNF76 Bos taurus ENSBTAG00000006170 I 0.766
ENSAMEG00000000752 Ailuropoda melanoleuca ENSAMEG00000000752 I 0.766
ENSBTAP00000008112-D1 Bos grunniens ENSBTAP00000008112-D1 I 0.766
Myotis_brandtii_ZNF76_10017771 Myotis brandtii Myotis_brandtii_ZNF76_10017771 I 0.766
ZNF76 Tursiops truncatus ENSTTRG00000009380 I 0.766
Gfo_R002960 Geospiza fortis Gfo_R002960 I 0.766
Tal_R002540 Tyto alba Tal_R002540 I 0.766
ENSP00000363064 Macaca fascicularis ENSP00000363064 I 0.766
ZNF76 Pan troglodytes ENSPTRG00000018080 I 0.766
ZNF76 Monodelphis domestica ENSMODG00000013806 I 0.766
ZNF76 Macaca mulatta ENSMMUG00000023559 I 0.766
ENSMPUG00000003522 Mustela putorius furo ENSMPUG00000003522 I 0.766
ENSCSAG00000009955 Chlorocebus sabaeus ENSCSAG00000009955 I 0.766
ZNF76 Oryctolagus cuniculus ENSOCUG00000015630 I 0.766
Zfp523 Mus musculus ENSMUSG00000024220 I 0.766
ZNF76 Dasypus novemcinctus ENSDNOG00000015856 I 0.766
ZNF76 Myotis lucifugus ENSMLUG00000008610 I 0.766
ENSFALG00000003698 Ficedula albicollis ENSFALG00000003698 I 0.766
ZNF76 Homo sapiens ENSG00000065029 D 0.766
ZNF76 Gorilla gorilla ENSGGOG00000014188 I 0.766
ZNF76 Loxodonta africana ENSLAFG00000026071 I 0.766
ZNF76 Equus caballus ENSECAG00000014843 I 0.766
ZNF76 Canis familiaris ENSCAFG00000001304 I 0.766
ZNF76 Otolemur garnettii ENSOGAG00000002935 I 0.766
Zfp523 Rattus norvegicus ENSRNOG00000000501 I 0.766
ENSOPRG00000009136 Ochotona princeps ENSOPRG00000009136 I 0.766
ENSSHAG00000009934 Sarcophilus harrisii ENSSHAG00000009934 I 0.766
ZNF76 Sus scrofa ENSSSCG00000001537 I 0.766
ZNF76 Taeniopygia guttata ENSTGUG00000001745 I 0.766
ENSSTOG00000000256 Ictidomys tridecemlineatus ENSSTOG00000000256 I 0.766
ZNF76 Felis catus ENSFCAG00000005893 I 0.766
ZNF76 Pteropus vampyrus ENSPVAG00000008041 I 0.766
ENSPANG00000021154 Papio anubis ENSPANG00000021154 I 0.766
ZNF76 Cavia porcellus ENSCPOG00000007381 I 0.766
ENSPPYG00000016525 Pongo abelii ENSPPYG00000016525 I 0.766
ZNF76 Callithrix jacchus ENSCJAG00000015519 I 0.766
ZNF76 Choloepus hoffmanni ENSCHOG00000003197 I 0.766
ENSAMXG00000008869 Astyanax mexicanus ENSAMXG00000008869 I 0.765
BGLB001048 Biomphalaria glabrata BGLB001048 I 0.765
ENSAPLG00000005226 Anas platyrhynchos ENSAPLG00000005226 I 0.758
estExt_fgenesh2_pg.C_1970081 Branchiostoma floridae estExt_fgenesh2_pg.C_1970081 I 0.758