znf143b (Tetraodon nigroviridis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSTNIG00000013739 T112098_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ZNF143
M02899_2.00
Homo sapiens
YWCCCAYAATGCAYYG

CRRTGCATTRTGGGWR
SELEX
Jolma et al.(2013)
ZNF143_1
0.814 0.919
ZNF143
M07931_2.00
Homo sapiens
RACTACAWYTCCCAG

CTGGGARWTGTAGTY
ChIP-seq
Gerstein et al.(2012)
GM12878_ZNF143_Stanford
0.814 0.919
ZNF143
M08910_2.00
Homo sapiens
RRACTACAWYTCCCAGVRKSCH

DGSMYBCTGGGARWTGTAGTYY
Misc
Kulakovskiy et al.(2013)
ZN143_HUMAN.H11MO.0.A
0.814 0.919
ZNF143
M09510_2.00
Homo sapiens
NNYTCCCAKVAKSCH

DGSMTBMTGGGARNN
Misc
Heinz et al.(2010)
CUTLL-ZNF143_GSE29600
0.814 0.919
ZNF143
M10247_2.00
Homo sapiens
NYYWCCCABMATGCAHYRCRNB

VNYGYRDTGCATKVTGGGWRRN
Transfac
Matys et al.(2006)
V$STAF_01
0.814 0.919
ZNF143
M10248_2.00
Homo sapiens
MHBWCCCAKVRTBCMWHGMRV

BYKCDWKGVAYBMTGGGWVDK
Transfac
Matys et al.(2006)
V$STAF_02
0.814 0.919
ZNF143
M10249_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$STAF_Q4_01
0.814 0.919
Zfp143
M09010_2.00
Mus musculus
RRACTACAWYTCCCAGVRKSCH

DGSMYBCTGGGARWTGTAGTYY
Misc
Kulakovskiy et al.(2013)
ZN143_MOUSE.H11MO.0.A
0.813 0.919
ZNF76
M04398_2.00
Homo sapiens
NNHWCCCABAATGCAHYRCRN

NYGYRDTGCATTVTGGGWDNN
SELEX
Yin et al.(2017)
ZNF76_eDBD_HT-SELEX
0.766 0.826
ZNF76
M08278_2.00
Homo sapiens
BCSCRNDGSMTBCTGGGARNT

ANYTCCCAGVAKSCHNYGSGV
ChIP-seq
Schmitges et al.(2016)
P36508_1-7.RCADE
0.766 0.826
ZNF76
M08856_2.00
Homo sapiens
ACTMCMHYTCCCAGVRKSCHHY

RDDGSMYBCTGGGARDKGKAGT
Misc
Kulakovskiy et al.(2013)
ZNF76_HUMAN.H11MO.0.C
0.766 0.826
ZNF76
M04399_2.00
Homo sapiens
NYTWCCCAYAATGCAHYRCDN

NHGYRDTGCATTRTGGGWARN
SELEX
Yin et al.(2017)
ZNF76_eDBD_Methyl-HT-SELEX
0.766 0.826
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000016741 C2H2 ZF 235 259
ENSTNIP00000016741 C2H2 ZF 265 289
ENSTNIP00000016741 C2H2 ZF 295 319
ENSTNIP00000016741 C2H2 ZF 325 349
ENSTNIP00000016741 C2H2 ZF 355 379
ENSTNIP00000016741 C2H2 ZF 385 409
ENSTNIP00000016741 C2H2 ZF 415 438

Links

Other C2H2 ZF family TFs
Other Tetraodon nigroviridis TFs

114 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
RLT1 Arabidopsis thaliana AT1G28420 D 0.000
TCM_008214 Theobroma cacao TCM_008214 I 0.000
fgenesh1_pg.scaffold_15000027 Physcomitrella patens fgenesh1_pg.scaffold_15000027 I 0.000
mgf006635m Mimulus guttatus mgf006635m I 0.000
mgf006858m Mimulus guttatus mgf006858m I 0.000
Aquca_051_00028 Aquilegia coerulea Aquca_051_00028 I 0.000
Bostr.15697s0165 Boechera stricta Bostr.15697s0165 I 0.000
Bostr.3148s0041 Boechera stricta Bostr.3148s0041 I 0.000
Cagra.0381s0009 Capsella grandiflora Cagra.0381s0009 I 0.000
Cagra.1822s0015 Capsella grandiflora Cagra.1822s0015 I 0.000
Carubv10025737m.g Capsella rubella Carubv10025737m.g I 0.000
Ciclev10014022m.g Citrus clementina Ciclev10014022m.g I 0.000
Ciclev10014023m.g Citrus clementina Ciclev10014023m.g I 0.000
Eucgr.D00596 Eucalyptus grandis Eucgr.D00596 I 0.000
Eucgr.K01058 Eucalyptus grandis Eucgr.K01058 I 0.000
Cucsa.087050 Cucumis sativus Cucsa.087050 I 0.000
Cucsa.046480 Cucumis sativus Cucsa.046480 I 0.000
cassava43653.valid.m1 Manihot esculenta cassava43653.valid.m1 I 0.000
TCM_029805 Theobroma cacao TCM_029805 I 0.000
VIT_10s0003g00290 Vitis vinifera VIT_10s0003g00290 I 0.000
VIT_12s0028g03080 Vitis vinifera VIT_12s0028g03080 I 0.000
Ca_00337 Cicer arietinum Ca_00337 I 0.000
Ca_06343 Cicer arietinum Ca_06343 I 0.000
Ca_11272 Cicer arietinum Ca_11272 I 0.000
Ca_21400 Cicer arietinum Ca_21400 I 0.000
Cla008712 Citrullus lanatus Cla008712 I 0.000
Cla009803 Citrullus lanatus Cla009803 I 0.000
Pm010098 Prunus mume Pm010098 I 0.000
29983.m003128 Ricinus communis 29983.m003128 I 0.000
30190.m011307 Ricinus communis 30190.m011307 I 0.000
cassava1593.valid.m1 Manihot esculenta cassava1593.valid.m1 I 0.000
evm.TU.supercontig_27.2 Carica papaya evm.TU.supercontig_27.2 I 0.000
evm.TU.supercontig_83.97 Carica papaya evm.TU.supercontig_83.97 I 0.000
Pavir.Ca00923 Panicum virgatum Pavir.Ca00923 I 0.000
Pavir.J20612 Panicum virgatum Pavir.J20612 I 0.000
SapurV1A.0012s0660 Salix purpurea SapurV1A.0012s0660 I 0.000
SapurV1A.0032s0540 Salix purpurea SapurV1A.0032s0540 I 0.000
SapurV1A.0118s0310 Salix purpurea SapurV1A.0118s0310 I 0.000
SapurV1A.0693s0030 Salix purpurea SapurV1A.0693s0030 I 0.000
SapurV1A.3333s0010 Salix purpurea SapurV1A.3333s0010 I 0.000
SapurV1A.3547s0010 Salix purpurea SapurV1A.3547s0010 I 0.000
Thhalv10003131m.g Eutrema salsugineum Thhalv10003131m.g I 0.000
Thhalv10006543m.g Eutrema salsugineum Thhalv10006543m.g I 0.000
PK06068.1 Cannabis sativa PK06068.1 I 0.000
PK13272.1 Cannabis sativa PK13272.1 I 0.000
PDK_20s1402391g002 Phoenix dactylifera PDK_20s1402391g002 I 0.000
orange1.1g004454m.g Citrus sinensis orange1.1g004454m.g I 0.000
orange1.1g000279m.g Citrus sinensis orange1.1g000279m.g I 0.000
MDP0000288192 Malus domestica MDP0000288192 I 0.000
gene17756-v1.0-hybrid Fragaria vesca gene17756-v1.0-hybrid I 0.000
gene29752-v1.0-hybrid Fragaria vesca gene29752-v1.0-hybrid I 0.000
Gorai.008G155100 Gossypium raimondii Gorai.008G155100 I 0.000
Gorai.010G243500 Gossypium raimondii Gorai.010G243500 I 0.000
Gorai.010G256900 Gossypium raimondii Gorai.010G256900 I 0.000
Lus10013979.g Linum usitatissimum Lus10013979.g I 0.000
Lus10015325.g Linum usitatissimum Lus10015325.g I 0.000
Lus10015400.g Linum usitatissimum Lus10015400.g I 0.000
Lus10018634.g Linum usitatissimum Lus10018634.g I 0.000
Lus10025454.g Linum usitatissimum Lus10025454.g I 0.000
Lus10039870.g Linum usitatissimum Lus10039870.g I 0.000
MDP0000192108 Malus domestica MDP0000192108 I 0.000
MDP0000207866 Malus domestica MDP0000207866 I 0.000
PDK_20s1551001g001 Phoenix dactylifera PDK_20s1551001g001 I 0.000
AMTR_s00058p00137050 Amborella trichopoda AMTR_s00058p00137050 I 0.000
GLYMA06G44290 Glycine max GLYMA06G44290 I 0.000
GLYMA07G32180 Glycine max GLYMA07G32180 I 0.000
GLYMA13G24370 Glycine max GLYMA13G24370 I 0.000
GLYMA13G30860 Glycine max GLYMA13G30860 I 0.000
GLYMA14G03850 Glycine max GLYMA14G03850 I 0.000
GRMZM2G060541 Zea mays GRMZM2G060541 I 0.000
GRMZM2G122750 Zea mays GRMZM2G122750 I 0.000
GRMZM2G125294 Zea mays GRMZM2G125294 I 0.000
GRMZM2G159357 Zea mays GRMZM2G159357 I 0.000
GSMUA_Achr6G26980_001 Musa acuminata GSMUA_Achr6G26980_001 I 0.000
LPERR01G22320 Leersia perrieri LPERR01G22320 I 0.000
LPERR05G21380 Leersia perrieri LPERR05G21380 I 0.000
MLOC_62571 Hordeum vulgare MLOC_62571 I 0.000
GLYMA04G15260 Glycine max GLYMA04G15260 I 0.000
GLYMA02G44910 Glycine max GLYMA02G44910 I 0.000
fgenesh2_kg.8__392__AT5G44180.1 Arabidopsis lyrata fgenesh2_kg.8__392__AT5G44180.1 I 0.000
RLT2 Arabidopsis thaliana AT5G44180 I 0.000
BGIOSGA004179 Oryza indica BGIOSGA004179 I 0.000
BGIOSGA022450 Oryza indica BGIOSGA022450 I 0.000
Bo3g143570 Brassica oleracea Bo3g143570 I 0.000
Bo5g055970 Brassica oleracea Bo5g055970 I 0.000
Bo7g067190 Brassica oleracea Bo7g067190 I 0.000
Bra010869 Brassica rapa Bra010869 I 0.000
Bra032908 Brassica rapa Bra032908 I 0.000
Bra033725 Brassica rapa Bra033725 I 0.000
BRADI2G16647 Brachypodium distachyon BRADI2G16647 I 0.000
BRADI2G46230 Brachypodium distachyon BRADI2G46230 I 0.000
F775_01844 Aegilops tauschii F775_01844 I 0.000
HB-1 Arabidopsis lyrata fgenesh2_kg.1__3015__AT1G28420.1 I 0.000
MTR_2g014490 Medicago truncatula MTR_2g014490 I 0.000
MTR_3g045830 Medicago truncatula MTR_3g045830 I 0.000
POPTR_0007s01330 Populus trichocarpa POPTR_0007s01330 I 0.000
POPTR_0011s05660 Populus trichocarpa POPTR_0011s05660 I 0.000
POPTR_0017s04760 Populus trichocarpa POPTR_0017s04760 I 0.000
PRUPE_ppa000115mg Prunus persica PRUPE_ppa000115mg I 0.000
PRUPE_ppa005223mg Prunus persica PRUPE_ppa005223mg I 0.000
Sb03g030770 Sorghum bicolor Sb03g030770 I 0.000
Sb03g030782 Sorghum bicolor Sb03g030782 I 0.000
SELMODRAFT_422900 Selaginella moellendorffii SELMODRAFT_422900 I 0.000
SELMODRAFT_428998 Selaginella moellendorffii SELMODRAFT_428998 I 0.000
SELMODRAFT_447019 Selaginella moellendorffii SELMODRAFT_447019 I 0.000
SELMODRAFT_447089 Selaginella moellendorffii SELMODRAFT_447089 I 0.000
Si004333m.g Setaria italica Si004333m.g I 0.000
Si020949m.g Setaria italica Si020949m.g I 0.000
Solyc02g077660.2 Solanum lycopersicum Solyc02g077660.2 I 0.000
OS01G0672201 Oryza sativa OS01G0672201 I 0.000
ORUFI05G27630 Oryza rufipogon ORUFI05G27630 I 0.000
MTR_4g088375 Medicago truncatula MTR_4g088375 I 0.000
OB01G35240 Oryza brachyantha OB01G35240 I 0.000
OBART05G25730 Oryza barthii OBART05G25730 I 0.000
OGLUM01G29920 Oryza glumaepatula OGLUM01G29920 I 0.000
OGLUM05G27370 Oryza glumaepatula OGLUM05G27370 I 0.000
OMERI01G23740 Oryza meridionalis OMERI01G23740 I 0.000
ONIVA01G29520 Oryza nivara ONIVA01G29520 I 0.000
ONIVA05G27640 Oryza nivara ONIVA05G27640 I 0.000
OPUNC01G25990 Oryza punctata OPUNC01G25990 I 0.000
ORGLA05G0222200 Oryza glaberrima ORGLA05G0222200 I 0.000
ORUFI01G29060 Oryza rufipogon ORUFI01G29060 I 0.000
Solyc07g053610.2 Solanum lycopersicum Solyc07g053610.2 I 0.000
Lus10017688.g Linum usitatissimum Lus10017688.g N 0.000
MTR_5g089870 Medicago truncatula MTR_5g089870 N 0.000
MTR_4g078860 Medicago truncatula MTR_4g078860 N 0.000