zic5 (Tetraodon nigroviridis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSTNIG00000014980 T112113_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Zic5
M00780_2.00 		Mus musculus
BRCCCCCYDS
SHRGGGGGYV		 PBM
Weirauch et al.(2013)
pTH2818 		0.816 0.955
ZIC5
M04471_2.00 		Homo sapiens
NKACCCCCCGCTGHGH
DCDCAGCGGGGGGTMN		 SELEX
Yin et al.(2017)
ZIC5_eDBD_HT-SELEX 		0.806 0.945
ZIC5
M04472_2.00 		Homo sapiens
NKACCCCCYGCTGTGM
KCACAGCRGGGGGTMN		 SELEX
Yin et al.(2017)
ZIC5_eDBD_Methyl-HT-SELEX 		0.806 0.945
Zic1
M00137_2.00 		Mus musculus
NCMYVBNGNK
MNCNVBRKGN		 PBM
Badis et al.(2009)
Zic1_0991 		0.770 0.918
ZIC1
M02893_2.00 		Homo sapiens
KRCCCCCYGCTGYG
CRCAGCRGGGGGYM		 SELEX
Jolma et al.(2013)
ZIC1_1 		0.770 0.918
ZIC1
M04485_2.00 		Homo sapiens
BVCCMCCYGYHGYGH
DCRCDRCRGGKGGBV		 SELEX
Yin et al.(2017)
ZIC1_eDBD_HT-SELEX 		0.770 0.918
ZIC1
M04487_2.00 		Homo sapiens
BVCCCCCYGCTGYGH
DCRCAGCRGGGGGBV		 SELEX
Yin et al.(2017)
ZIC1_FL_HT-SELEX 		0.770 0.918
ZIC1
M08900_2.00 		Homo sapiens
BMSCHCCCM
KGGGDGSKV		 Misc
Kulakovskiy et al.(2013)
ZIC1_HUMAN.H11MO.0.B 		0.770 0.918
Zic1
M08990_2.00 		Mus musculus
BMSCHCCCM
KGGGDGSKV		 Misc
Kulakovskiy et al.(2013)
ZIC1_MOUSE.H11MO.0.B 		0.770 0.918
ZIC1
M10226_2.00 		Homo sapiens
KRCNMMCYV
BRGKKNGTM		 Transfac
Matys et al.(2006)
V$ZIC1_01 		0.770 0.918
ZIC1
M10227_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ZIC1_Q2 		0.770 0.918
ZIC1
M04486_2.00 		Homo sapiens
BACCCCCYRCTGTGM
KCACAGYRGGGGGTV		 SELEX
Yin et al.(2017)
ZIC1_eDBD_Methyl-HT-SELEX 		0.770 0.918
ZIC1
M04488_2.00 		Homo sapiens
BRCCCCCTGCTGTGH
DCACAGCAGGGGGYV		 SELEX
Yin et al.(2017)
ZIC1_FL_Methyl-HT-SELEX 		0.770 0.918
ZIC4
M02912_2.00 		Homo sapiens
KRCCCCCYGYDGNGH
DCNCHRCRGGGGGYM		 SELEX
Jolma et al.(2013)
ZIC4_1 		0.763 0.918
ZIC4
M04566_2.00 		Homo sapiens
BVCMHCMYRYNRYGH
DCRYNRYRKGDKGBV		 SELEX
Yin et al.(2017)
ZIC4_eDBD_HT-SELEX 		0.763 0.918
ZIC4
M04567_2.00 		Homo sapiens
BRCCHCCYRYBGTKH
DMACVRYRGGDGGYV		 SELEX
Yin et al.(2017)
ZIC4_eDBD_Methyl-HT-SELEX 		0.763 0.918
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000018029 C2H2 ZF 282 300
ENSTNIP00000018029 C2H2 ZF 309 336
ENSTNIP00000018029 C2H2 ZF 342 366
ENSTNIP00000018029 C2H2 ZF 372 396
ENSTNIP00000018029 C2H2 ZF 402 426

Links

Other C2H2 ZF family TFs
Other Tetraodon nigroviridis TFs

Invalid Input OrderBy

172 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action