CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
sp5l
(
Tetraodon nigroviridis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSTNIG00000015074
T112118_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SP4
M02879_2.00
Homo sapiens
NWRGCCACGCCCMCHYN
NRDGKGGGCGTGGCYWN
SELEX
Jolma et al.(2013)
SP4_1
0.774
0.848
SP4
M08296_2.00
Homo sapiens
NNVGCYCCKCCYMYH
DRKRGGMGGRGCBNN
ChIP-seq
Schmitges et al.(2016)
Q02446.MEME
0.774
0.848
SP4
M08873_2.00
Homo sapiens
BYHDKCYCCGCCYYYHBSBB
VVSVDRRRGGCGGRGMHDRV
Misc
Kulakovskiy et al.(2013)
SP4_HUMAN.H11MO.0.A
0.774
0.848
SP4
M10165_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SP4_Q3
0.774
0.848
SP4
M10166_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SP4_Q5
0.774
0.848
Sp3
M08978_2.00
Mus musculus
NBBNVSCCCCKCCCMBBBNN
NNVVVKGGGMGGGGSBNVVN
Misc
Kulakovskiy et al.(2013)
SP3_MOUSE.H11MO.0.B
0.760
0.818
Sp4
M01862_2.00
Mus musculus
NMCGCCCMY
RKGGGCGKN
PBM
Weirauch et al.(2014)
pTH4998
0.758
0.833
Sp4
M00133_2.00
Mus musculus
HMCGCCCMYN
NRKGGGCGKD
PBM
Badis et al.(2009)
Sp4_1011
0.758
0.833
Sp4
M05859_2.00
Mus musculus
DGNYMCGCCCHNN
NNDGGGCGKRNCH
SMiLE-seq
Isakova et al.(2017)
SP4
0.758
0.833
Sp4
M08975_2.00
Mus musculus
BYHDKCYCCGCCYYYHBSBB
VVSVDRRRGGCGGRGMHDRV
Misc
Kulakovskiy et al.(2013)
SP4_MOUSE.H11MO.0.B
0.758
0.833
Spps
M06159_2.00
Drosophila melanogaster
KWDRCCMCGCCCMBH
DVKGGGCGKGGYHWM
B1H
Zhu et al.(2011)
CG5669_SANGER_10_FBgn0039169
0.758
0.788
Spps
M06160_2.00
Drosophila melanogaster
BDDGCCMCGCCCMYN
NRKGGGCGKGGCHHV
B1H
Zhu et al.(2011)
CG5669_SOLEXA_5_FBgn0039169
0.758
0.788
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTNIP00000018127
C2H2 ZF
243
264
HICHIPECGKVYKKTSHLKAHR
ENSTNIP00000018127
C2H2 ZF
272
296
FICNWLFCGKSFTRSDELQRHLRTH
ENSTNIP00000018127
C2H2 ZF
302
324
FGCQQCGKRFMRSDHLSKHVKTH
Links
Other
C2H2 ZF
family TFs
Other
Tetraodon nigroviridis
TFs
158 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy