bcl6ab (Takifugu rubripes)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSTRUG00000001788 T112214_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BCL6B
M02896_2.00 		Homo sapiens
TGCTTTCTAGGAATTMM
KKAATTCCTAGAAAGCA		 SELEX
Jolma et al.(2013)
BCL6B_1 		0.811 0.861
BCL6B
M04499_2.00 		Homo sapiens
NNGCTTTCKAGGAAHN
NDTTCCTMGAAAGCNN		 SELEX
Yin et al.(2017)
BCL6B_eDBD_HT-SELEX_1 		0.811 0.861
BCL6B
M04500_2.00 		Homo sapiens
NDTTCCTCGATTRCVN
NBGYAATCGAGGAAHN		 SELEX
Yin et al.(2017)
BCL6B_eDBD_HT-SELEX_2 		0.811 0.861
BCL6B
M04501_2.00 		Homo sapiens
NHGCTTTCTAGGAAHN
NDTTCCTAGAAAGCDN		 SELEX
Yin et al.(2017)
BCL6B_eDBD_Methyl-HT-SELEX_1 		0.811 0.861
BCL6B
M04502_2.00 		Homo sapiens
NWTTCCTAGATTACRN
NYGTAATCTAGGAAWN		 SELEX
Yin et al.(2017)
BCL6B_eDBD_Methyl-HT-SELEX_2 		0.811 0.861
Bcl6b
M00128_2.00 		Mus musculus
NYYYTYCYWNNN
NNNWRGRARRRN		 PBM
Badis et al.(2009)
Bcl6b_0961 		0.802 0.852
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000004125 C2H2 ZF 496 518
ENSTRUP00000004125 C2H2 ZF 524 546
ENSTRUP00000004125 C2H2 ZF 552 574
ENSTRUP00000004125 C2H2 ZF 580 602
ENSTRUP00000004125 C2H2 ZF 608 631
ENSTRUP00000004126 C2H2 ZF 491 513
ENSTRUP00000004126 C2H2 ZF 519 541
ENSTRUP00000004126 C2H2 ZF 547 569
ENSTRUP00000004126 C2H2 ZF 575 597
ENSTRUP00000004126 C2H2 ZF 603 626

Links

Other C2H2 ZF family TFs
Other Takifugu rubripes TFs

Invalid Input OrderBy

39 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action