gli2b (Takifugu rubripes)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSTRUG00000001954 T112216_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Gli3
M01022_2.00
Mus musculus
NGACCACCCNN

NNGGGTGGTCN
PBM
Peterson et al.(2012)
Gli3
0.809 0.948
Gli3
M08023_2.00
Mus musculus
RGVCCACCCAS

STGGGTGGBCY
ChIP-seq
Chen et al.(2011)
GSE11062_Gli3
0.809 0.948
Gli3
M09512_2.00
Mus musculus
RGACCACCCASR

YSTGGGTGGTCY
Misc
Heinz et al.(2010)
Limb-GLI3_GSE11077
0.809 0.948
GLI3
M04416_2.00
Homo sapiens
VGACCACCCACVNHG

CDNBGTGGGTGGTCB
SELEX
Yin et al.(2017)
GLI3_eDBD_HT-SELEX
0.763 0.930
GLI3
M02642_2.00
Homo sapiens
GACCACCCANK

MNTGGGTGGTC
SELEX
Hallikas et al.(2006)
GLI3
0.763 0.930
GLI3
M08875_2.00
Homo sapiens
VRACCACCCAV

BTGGGTGGTYB
Misc
Kulakovskiy et al.(2013)
GLI3_HUMAN.H11MO.0.B
0.763 0.930
GLI3
M10167_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI3_01
0.763 0.930
GLI3
M10168_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI3_Q5_01
0.763 0.930
GLI3
M04417_2.00
Homo sapiens
CWHBGTGGGTGGTCY

RGACCACCCACVDWG
SELEX
Yin et al.(2017)
GLI3_eDBD_Methyl-HT-SELEX
0.763 0.930
Gli2
M01024_2.00
Mus musculus
NGACCACCYN

NRGGTGGTCN
PBM
Peterson et al.(2012)
Gli2
0.757 0.939
GLI2
M02875_2.00
Homo sapiens
GMCCACMCANVNHB

VDNBNTGKGTGGKC
SELEX
Jolma et al.(2013)
GLI2_1
0.757 0.939
GLI2
M02876_2.00
Homo sapiens
GCGACCACVCWR

YWGBGTGGTCGC
SELEX
Jolma et al.(2013)
GLI2_2
0.757 0.939
GLI2
M02732_2.00
Homo sapiens
GACCACMCAN

NTGKGTGGTC
SELEX
Jolma et al.(2010)
GLI2_monomer
0.757 0.939
GLI2
M04402_2.00
Homo sapiens
VGACCACCCACVDHG

CDHBGTGGGTGGTCB
SELEX
Yin et al.(2017)
GLI2_eDBD_HT-SELEX
0.757 0.939
GLI2
M02641_2.00
Homo sapiens
GACCACCCAHG

CDTGGGTGGTC
SELEX
Hallikas et al.(2006)
GLI2
0.757 0.939
GLI2
M10114_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI2_Q3
0.757 0.939
GLI2
M10115_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI2_Q6
0.757 0.939
GLI2
M04403_2.00
Homo sapiens
RGACCACCCACVWWG

CWWBGTGGGTGGTCY
SELEX
Yin et al.(2017)
GLI2_eDBD_Methyl-HT-SELEX
0.757 0.939
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000004511 C2H2 ZF 371 396
ENSTRUP00000004511 C2H2 ZF 404 431
ENSTRUP00000004511 C2H2 ZF 437 461
ENSTRUP00000004511 C2H2 ZF 467 492
ENSTRUP00000004511 C2H2 ZF 498 523
ENSTRUP00000004512 C2H2 ZF 382 407
ENSTRUP00000004512 C2H2 ZF 415 442
ENSTRUP00000004512 C2H2 ZF 448 472
ENSTRUP00000004512 C2H2 ZF 478 503
ENSTRUP00000004512 C2H2 ZF 509 534
ENSTRUP00000004513 C2H2 ZF 370 395
ENSTRUP00000004513 C2H2 ZF 403 430
ENSTRUP00000004513 C2H2 ZF 436 460
ENSTRUP00000004513 C2H2 ZF 466 491
ENSTRUP00000004513 C2H2 ZF 497 522
ENSTRUP00000004514 C2H2 ZF 297 322
ENSTRUP00000004514 C2H2 ZF 330 357
ENSTRUP00000004514 C2H2 ZF 363 387
ENSTRUP00000004514 C2H2 ZF 393 418
ENSTRUP00000004514 C2H2 ZF 424 449

Links

Other C2H2 ZF family TFs
Other Takifugu rubripes TFs

131 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSLOCG00000002028 Lepisosteus oculatus ENSLOCG00000002028 I 0.818
ENSONIG00000004472 Oreochromis niloticus ENSONIG00000004472 I 0.818
ENSPFOG00000014778 Poecilia formosa ENSPFOG00000014778 I 0.815
ENSONIG00000003608 Oreochromis niloticus ENSONIG00000003608 I 0.815
ENSGMOG00000010335 Gadus morhua ENSGMOG00000010335 I 0.815
gli2a Danio rerio ENSDARG00000025641 I 0.814
Gli3 Rattus norvegicus ENSRNOG00000014395 I 0.809
GLI3 Cavia porcellus ENSCPOG00000013233 I 0.809
Gli3 Mus musculus ENSMUSG00000021318 D 0.809
ENSSTOG00000020844 Ictidomys tridecemlineatus ENSSTOG00000020844 I 0.809
gli2b Gasterosteus aculeatus ENSGACG00000001547 I 0.808
gli1 Gasterosteus aculeatus ENSGACG00000006458 I 0.807
ENSGMOG00000007975 Gadus morhua ENSGMOG00000007975 I 0.807
gli1 Takifugu rubripes ENSTRUG00000014998 I 0.807
ENSXMAG00000017965 Xiphophorus maculatus ENSXMAG00000017965 I 0.805
gli1 Tetraodon nigroviridis ENSTNIG00000007058 I 0.805
ENSPFOG00000006269 Poecilia formosa ENSPFOG00000006269 I 0.805
ENSONIG00000005084 Oreochromis niloticus ENSONIG00000005084 I 0.805
gli1 Oryzias latipes ENSORLG00000005455 I 0.805
gli2.S Xenopus laevis XB-GENE-6251939 I 0.803
fgenesh2_pg.scaffold_137000068 Branchiostoma floridae fgenesh2_pg.scaffold_137000068 I 0.799
fgenesh2_pg.scaffold_169000072 Branchiostoma floridae fgenesh2_pg.scaffold_169000072 I 0.799
gli2.L Xenopus laevis XB-GENE-17342592 I 0.798
gli2b Tetraodon nigroviridis ENSTNIG00000017828 I 0.781
GLI2 Anolis carolinensis ENSACAG00000004133 I 0.771
ENSAMXG00000003125 Astyanax mexicanus ENSAMXG00000003125 I 0.771
gli2b Takifugu rubripes ENSTRUG00000010444 I 0.771
Ogr02489 Ophisaurus gracilis Ogr02489 I 0.771
ENSAMXG00000006646 Astyanax mexicanus ENSAMXG00000006646 I 0.771
Pvit_06470 Pogona vitticeps Pvit_06470 I 0.771
gli2b Danio rerio ENSDARG00000020884 I 0.771
Gfo_R001212 Geospiza fortis Gfo_R001212 I 0.769
ENSFALG00000013217 Ficedula albicollis ENSFALG00000013217 I 0.769
ENSPFOG00000005116 Poecilia formosa ENSPFOG00000005116 I 0.769
GLI2 Meleagris gallopavo ENSMGAG00000011872 I 0.769
Brh_R010932 Buceros rhinoceros Brh_R010932 I 0.769
GLI2 Taeniopygia guttata ENSTGUG00000004599 I 0.769
Afo_R006826 Aptenodytes forsteri Afo_R006826 I 0.769
Tal_R006208 Tyto alba Tal_R006208 I 0.769
Cmyd_10009086 Chelonia mydas Cmyd_10009086 I 0.769
ENSPSIG00000008752 Pelodiscus sinensis ENSPSIG00000008752 I 0.769
ENSXMAG00000006443 Xiphophorus maculatus ENSXMAG00000006443 I 0.769
Aan_R003640 Calypte anna Aan_R003640 I 0.769
GLI2 Gallus gallus ENSGALG00000011630 I 0.769
ENSAPLG00000015141 Anas platyrhynchos ENSAPLG00000015141 I 0.769
gli3 Danio rerio ENSDARG00000052131 I 0.766
ENSLACG00000017364 Latimeria chalumnae ENSLACG00000017364 I 0.764
ENSPSIG00000017804 Pelodiscus sinensis ENSPSIG00000017804 I 0.763
ENSPANG00000014545 Papio anubis ENSPANG00000014545 I 0.763
GLI3 Pan troglodytes ENSPTRG00000019117 I 0.763
ENSPPYG00000017613 Pongo abelii ENSPPYG00000017613 I 0.763
GLI3 Procavia capensis ENSPCAG00000015092 I 0.763
ENSTSYG00000009406 Tarsius syrichta ENSTSYG00000009406 I 0.763
Gfo_R007869 Geospiza fortis Gfo_R007869 I 0.763
ENSP00000379258 Macaca fascicularis ENSP00000379258 I 0.763
Pvit_19093 Pogona vitticeps Pvit_19093 I 0.763
gli3.L Xenopus laevis XB-GENE-865509 I 0.763
XP_002933450 Xenopus tropicalis XP_002933450 I 0.763
XP_002933449 Xenopus tropicalis XP_002933449 I 0.763
Cmyd_10007839 Chelonia mydas Cmyd_10007839 I 0.763
Brh_R008256 Buceros rhinoceros Brh_R008256 I 0.763
GLI3 Tupaia belangeri ENSTBEG00000006673 I 0.763
ENSSHAG00000009727 Sarcophilus harrisii ENSSHAG00000009727 I 0.763
GLI3 Ochotona princeps ENSOPRG00000011225 I 0.763
GLI3 Tursiops truncatus ENSTTRG00000003628 I 0.763
Afo_R007816 Aptenodytes forsteri Afo_R007816 I 0.763
Aan_R014715 Calypte anna Aan_R014715 I 0.763
GLI3 Pteropus vampyrus ENSPVAG00000015920 I 0.763
GLI3 Otolemur garnettii ENSOGAG00000012651 I 0.763
GLI3 Bos taurus ENSBTAG00000010671 I 0.763
GLI3 Oryctolagus cuniculus ENSOCUG00000006563 I 0.763
GLI3 Macaca mulatta ENSMMUG00000013614 I 0.763
GLI3 Canis familiaris ENSCAFG00000003535 I 0.763
GLI3 Felis catus ENSFCAG00000011989 I 0.763
GLI3 Callithrix jacchus ENSCJAG00000007690 I 0.763
GLI3 Myotis lucifugus ENSMLUG00000015711 I 0.763
ENSGALG00000012329 Gallus gallus ENSGALG00000012329 I 0.763
GLI3 Loxodonta africana ENSLAFG00000008944 I 0.763
GLI3 Homo sapiens ENSG00000106571 D 0.763
ENSMEUG00000013134 Macropus eugenii ENSMEUG00000013134 I 0.763
GLI3 Meleagris gallopavo ENSMGAG00000012277 I 0.763
ENSFALG00000005113 Ficedula albicollis ENSFALG00000005113 I 0.763
GLI3 Monodelphis domestica ENSMODG00000002714 I 0.763
ENSAMEG00000008405 Ailuropoda melanoleuca ENSAMEG00000008405 I 0.763
GLI3 Ornithorhynchus anatinus ENSOANG00000010699 I 0.763
ENSOARG00000017420 Ovis aries ENSOARG00000017420 I 0.763
GLI3 Anolis carolinensis ENSACAG00000017547 I 0.763
GLI3 Choloepus hoffmanni ENSCHOG00000003774 I 0.763
ENSNLEG00000003160 Nomascus leucogenys ENSNLEG00000003160 I 0.763
ENSCSAG00000015361 Chlorocebus sabaeus ENSCSAG00000015361 I 0.763
ENSAPLG00000004361 Anas platyrhynchos ENSAPLG00000004361 I 0.763
GLI3 Equus caballus ENSECAG00000009281 I 0.763
ENSMPUG00000018143 Mustela putorius furo ENSMPUG00000018143 I 0.763
GLI3 Dasypus novemcinctus ENSDNOG00000049286 I 0.763
ENSAMXG00000002477 Astyanax mexicanus ENSAMXG00000002477 I 0.763
GLI3 Gorilla gorilla ENSGGOG00000002026 I 0.763
Pvit_05813 Pogona vitticeps Pvit_05813 I 0.761
GLI1 Anolis carolinensis ENSACAG00000006541 I 0.761
ENSLOCG00000005938 Lepisosteus oculatus ENSLOCG00000005938 I 0.759
ENSAMXG00000017236 Astyanax mexicanus ENSAMXG00000017236 I 0.759
Gfo_R013682 Geospiza fortis Gfo_R013682 I 0.759
ENSAPLG00000005128 Anas platyrhynchos ENSAPLG00000005128 I 0.759
Tal_R009020 Tyto alba Tal_R009020 I 0.759
gli2b Tetraodon nigroviridis ENSTNIG00000010251 I 0.759
ENSSHAG00000004233 Sarcophilus harrisii ENSSHAG00000004233 I 0.759
GLI2 Monodelphis domestica ENSMODG00000000245 I 0.759
ENSP00000390436-D1 Bos grunniens ENSP00000390436-D1 I 0.757
GLI2 Canis familiaris ENSCAFG00000004821 I 0.757
GLI2 Bos taurus ENSBTAG00000011682 I 0.757
Myotis_brandtii_Gli2_10019076 Myotis brandtii Myotis_brandtii_Gli2_10019076 I 0.757
ENSAMEG00000008708 Ailuropoda melanoleuca ENSAMEG00000008708 I 0.757
GLI2 Homo sapiens ENSG00000074047 D 0.757
Gli2 Mus musculus ENSMUSG00000048402 D 0.757
GLI2 Pan troglodytes ENSPTRG00000012413 I 0.757
ENSMPUG00000000986 Mustela putorius furo ENSMPUG00000000986 I 0.757
ENSNLEG00000000944 Nomascus leucogenys ENSNLEG00000000944 I 0.757
ENSPPYG00000012778 Pongo abelii ENSPPYG00000012778 I 0.757
GLI2 Oryctolagus cuniculus ENSOCUG00000000638 I 0.757
ENSPANG00000024168 Papio anubis ENSPANG00000024168 I 0.757
ENSOARG00000013052 Ovis aries ENSOARG00000013052 I 0.757
Gli2 Rattus norvegicus ENSRNOG00000007261 I 0.757
GLI2 Sus scrofa ENSSSCG00000015733 I 0.757
ENSCSAG00000016668 Chlorocebus sabaeus ENSCSAG00000016668 I 0.757
GLI2 Cavia porcellus ENSCPOG00000015189 I 0.757
ENSCJAG00000013342 Callithrix jacchus ENSCJAG00000013342 I 0.757
GLI2 Dasypus novemcinctus ENSDNOG00000008730 I 0.757
GLI2 Felis catus ENSFCAG00000014531 I 0.757
ENSSTOG00000004582 Ictidomys tridecemlineatus ENSSTOG00000004582 I 0.757
GLI2 Macaca mulatta ENSMMUG00000001868 I 0.757
ENSMMUP00000002494 Macaca fascicularis ENSMMUP00000002494 I 0.757