CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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snai3
(
Takifugu rubripes
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSTRUG00000002385
T112221_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SNAI1
M04441_2.00
Homo sapiens
NVCACCTGYN
NRCAGGTGBN
SELEX
Yin et al.(2017)
SNAI1_eDBD_HT-SELEX
0.779
0.846
SNAI1
M04443_2.00
Homo sapiens
TRCACCTGYN
NRCAGGTGYA
SELEX
Yin et al.(2017)
SNAI1_FL_HT-SELEX
0.779
0.846
SNAI1
M08303_2.00
Homo sapiens
NNNNGCACCTGCYNB
VNRGCAGGTGCNNNN
ChIP-seq
Schmitges et al.(2016)
O95863.MEME
0.779
0.846
SNAI1
M08886_2.00
Homo sapiens
VCACCTGB
VCAGGTGB
Misc
Kulakovskiy et al.(2013)
SNAI1_HUMAN.H11MO.0.C
0.779
0.846
SNAI1
M10201_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SNA_Q4
0.779
0.846
SNAI1
M10202_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SNA_Q6
0.779
0.846
SNAI1
M04442_2.00
Homo sapiens
NRCACCTGYN
NRCAGGTGYN
SELEX
Yin et al.(2017)
SNAI1_eDBD_Methyl-HT-SELEX
0.779
0.846
SNAI1
M04444_2.00
Homo sapiens
YRCACCTGYN
NRCAGGTGYR
SELEX
Yin et al.(2017)
SNAI1_FL_Methyl-HT-SELEX
0.779
0.846
Snai1
M00781_2.00
Mus musculus
NNNTGTCANN
NNTGACANNN
PBM
Weirauch et al.(2013)
pTH2340
0.779
0.835
Snai1
M09002_2.00
Mus musculus
VCACCTGB
VCAGGTGB
Misc
Kulakovskiy et al.(2013)
SNAI1_MOUSE.H11MO.0.C
0.779
0.835
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTRUP00000005504
C2H2 ZF
179
201
FNCKYCEKEYISLGALKMHIRTH
ENSTRUP00000005504
C2H2 ZF
205
227
CVCKLCGKAFSRPWLLQGHIRTH
ENSTRUP00000005504
C2H2 ZF
233
255
FSCFHCSRAFADRSNLRAHLQTH
ENSTRUP00000005504
C2H2 ZF
261
282
YQCACCLKTFSRISLLAKHQEA
ENSTRUP00000005505
C2H2 ZF
155
177
FNCKYCEKEYISLGALKMHIRTH
ENSTRUP00000005505
C2H2 ZF
181
203
CVCKLCGKAFSRPWLLQGHIRTH
ENSTRUP00000005505
C2H2 ZF
209
231
FSCFHCSRAFADRSNLRAHLQTH
ENSTRUP00000005505
C2H2 ZF
237
258
YQCACCLKTFSRISLLAKHQEA
ENSTRUP00000005506
C2H2 ZF
145
167
FNCKYCEKEYISLGALKMHIRTH
ENSTRUP00000005506
C2H2 ZF
171
193
CVCKLCGKAFSRPWLLQGHIRTH
ENSTRUP00000005506
C2H2 ZF
199
221
FSCFHCSRAFADRSNLRAHLQTH
ENSTRUP00000005506
C2H2 ZF
227
248
YQCACCLKTFSRISLLAKHQEA
Links
Other
C2H2 ZF
family TFs
Other
Takifugu rubripes
TFs
37 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy