CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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bcl11aa
(
Takifugu rubripes
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSTRUG00000003815
T112242_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BCL11A
M07926_2.00
Homo sapiens
BTYTCASTTCCYYHH
DDRRGGAASTGARAV
ChIP-seq
Gerstein et al.(2012)
GM12878_BCL11A_HudsonAlpha
0.803
0.947
BCL11A
M08881_2.00
Homo sapiens
BHBYCABTTCCYBHNYN
NRNDVRGGAAVTGRVDV
Misc
Kulakovskiy et al.(2013)
BC11A_HUMAN.H11MO.0.A
0.803
0.947
BCL11A
M10187_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BCL11A_02
0.803
0.947
BCL11B
M04453_2.00
Homo sapiens
GTGAACGBNDNNVCTACAC
GTGTAGBNNHNVCGTTCAC
SELEX
Yin et al.(2017)
BCL11B_eDBD_HT-SELEX
0.799
0.921
BCL11B
M04454_2.00
Homo sapiens
GTGAACGBNDNHVCTACAC
GTGTAGBDNHNVCGTTCAC
SELEX
Yin et al.(2017)
BCL11B_eDBD_Methyl-HT-SELEX
0.799
0.921
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTRUP00000008981
C2H2 ZF
465
487
KCCEFCGKAFKFQSNLIVHRRSH
ENSTRUP00000008981
C2H2 ZF
493
515
YKCHLCDHACTQASKLKRHMKTH
ENSTRUP00000008981
C2H2 ZF
820
842
DTCEYCGKVFKNCSNLTVHRRSH
ENSTRUP00000008981
C2H2 ZF
848
870
YKCELCNYACAQSSKLTRHMKTH
ENSTRUP00000008981
C2H2 ZF
878
901
YKCEVCKMPFSVYSTLEKHMKKWH
ENSTRUP00000008982
C2H2 ZF
458
480
KCCEFCGKAFKFQSNLIVHRRSH
ENSTRUP00000008982
C2H2 ZF
486
508
YKCHLCDHACTQASKLKRHMKTH
ENSTRUP00000008982
C2H2 ZF
812
834
DTCEYCGKVFKNCSNLTVHRRSH
ENSTRUP00000008982
C2H2 ZF
840
862
YKCELCNYACAQSSKLTRHMKTH
ENSTRUP00000008982
C2H2 ZF
870
893
YKCEVCKMPFSVYSTLEKHMKKWH
ENSTRUP00000008983
C2H2 ZF
387
409
KCCEFCGKAFKFQSNLIVHRRSH
ENSTRUP00000008983
C2H2 ZF
415
437
YKCHLCDHACTQASKLKRHMKTH
ENSTRUP00000008983
C2H2 ZF
773
795
DTCEYCGKVFKNCSNLTVHRRSH
ENSTRUP00000008983
C2H2 ZF
801
823
YKCELCNYACAQSSKLTRHMKTH
ENSTRUP00000008983
C2H2 ZF
831
854
YKCEVCKMPFSVYSTLEKHMKKWH
ENSTRUP00000008984
C2H2 ZF
375
397
KCCEFCGKAFKFQSNLIVHRRSH
ENSTRUP00000008984
C2H2 ZF
403
425
YKCHLCDHACTQASKLKRHMKTH
ENSTRUP00000008984
C2H2 ZF
761
783
DTCEYCGKVFKNCSNLTVHRRSH
ENSTRUP00000008984
C2H2 ZF
789
811
YKCELCNYACAQSSKLTRHMKTH
ENSTRUP00000008984
C2H2 ZF
819
842
YKCEVCKMPFSVYSTLEKHMKKWH
Links
Other
C2H2 ZF
family TFs
Other
Takifugu rubripes
TFs
124 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy