gfi1b (Takifugu rubripes)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSTRUG00000004525 T112252_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Gfi1b
M08098_2.00
Mus musculus
MAATCWCWGCH

DGCWGWGATTK
ChIP-seq
Mathelier et al.(2014)
MA0483.1
0.785 0.877
sens
M03666_2.00
Drosophila melanogaster
TGCWSTGATTTATY

RATAAATCASWGCA
SELEX
Nitta et al.(2015)
sens_1
0.804 0.880
Gfi1b
M08977_2.00
Mus musculus
MAAYCACWGH

DCWGWGRTTK
Misc
Kulakovskiy et al.(2013)
GFI1B_MOUSE.H11MO.0.A
0.785 0.877
sens
M06056_2.00
Drosophila melanogaster
AAATCACDGC

GCHGTGATTT
B1H
Zhu et al.(2011)
sens_SANGER_10_FBgn0002573
0.804 0.880
Gfi1b
M09514_2.00
Mus musculus
MAATCWSWGC

GCWSWGATTK
Misc
Heinz et al.(2010)
HPC7-Gfi1b_GSE22178
0.785 0.877
sens
M06057_2.00
Drosophila melanogaster
NNNNAAATCACRGCH

DGCYGTGATTTNNNN
B1H
Zhu et al.(2011)
sens_SOLEXA_5_FBgn0002573
0.804 0.880
GFI1B
M00240_2.00
Homo sapiens
NNAAATCWSDN

NHSWGATTTNN
PBM
Barrera et al.(2016)
GFI1B_REF
0.783 0.870
GFI1B
M04523_2.00
Homo sapiens
NMAATCASDGCNNBBCACTNN

NNAGTGVVNNGCHSTGATTKN
SELEX
Yin et al.(2017)
GFI1B_eDBD_HT-SELEX
0.783 0.870
GFI1B
M08909_2.00
Homo sapiens
MAATCWSDGY

RCHSWGATTK
Misc
Kulakovskiy et al.(2013)
GFI1B_HUMAN.H11MO.0.A
0.783 0.870
GFI1B
M10243_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GFI1B_01
0.783 0.870
GFI1B
M10244_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GFI1B_Q6
0.783 0.870
GFI1B
M04524_2.00
Homo sapiens
NMAATCASWGCDNNBCACTHN

NDAGTGVNNHGCWSTGATTKN
SELEX
Yin et al.(2017)
GFI1B_eDBD_Methyl-HT-SELEX
0.783 0.870
GFI1
M00238_2.00
Homo sapiens
NWAWMNNNN

NNNNKWTWN
PBM
Barrera et al.(2016)
GFI1_REF
0.774 0.877
GFI1
M04507_2.00
Homo sapiens
BMAATCACDGCNHBBCACTMN

NKAGTGVVDNGCHGTGATTKV
SELEX
Yin et al.(2017)
GFI1_eDBD_HT-SELEX
0.774 0.877
Gfi1
M02668_2.00
Rattus norvegicus
NMAATCWVHS

SDBWGATTKN
SELEX
Mathelier et al.(2014)
MA0038.1
0.774 0.877
GFI1
M08905_2.00
Homo sapiens
MAATCWSWGY

RCWSWGATTK
Misc
Kulakovskiy et al.(2013)
GFI1_HUMAN.H11MO.0.C
0.774 0.877
Gfi1
M08984_2.00
Mus musculus
MAATCWSWGY

RCWSWGATTK
Misc
Kulakovskiy et al.(2013)
GFI1_MOUSE.H11MO.0.C
0.774 0.877
GFI1
M10235_2.00
Homo sapiens
NNNNNNNRCHSWGATTTDNNBNNN

NNNVNNHAAATCWSDGYNNNNNNN
Transfac
Matys et al.(2006)
V$GFI1_01
0.774 0.877
GFI1
M10236_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GFI1_Q6_01
0.774 0.877
GFI1
M00236_2.00
Homo sapiens
NAATMNNNN

NNNNKATTN
PBM
Barrera et al.(2016)
GFI1_L400F
0.774 0.877
GFI1
M04508_2.00
Homo sapiens
NNAGTGVVNHGCWSTGATTKV

BMAATCASWGCDNBBCACTNN
SELEX
Yin et al.(2017)
GFI1_eDBD_Methyl-HT-SELEX
0.774 0.877
GFI1B
M00239_2.00
Homo sapiens
NNAAATCWSDN

NHSWGATTTNN
PBM
Barrera et al.(2016)
GFI1B_A204T
0.773 0.862
sens-2
M06165_2.00
Drosophila melanogaster
RYAAATCWSDGCAYNC

GNRTGCHSWGATTTRY
B1H
Zhu et al.(2011)
sens-2_SANGER_2.5_FBgn0051632
0.756 0.812
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000010746 C2H2 ZF 162 185
ENSTRUP00000010746 C2H2 ZF 191 213
ENSTRUP00000010746 C2H2 ZF 219 241
ENSTRUP00000010746 C2H2 ZF 247 269
ENSTRUP00000010746 C2H2 ZF 275 297
ENSTRUP00000010746 C2H2 ZF 303 326
ENSTRUP00000010747 C2H2 ZF 169 191
ENSTRUP00000010747 C2H2 ZF 197 219
ENSTRUP00000010747 C2H2 ZF 225 247
ENSTRUP00000010747 C2H2 ZF 253 276

Links

Other C2H2 ZF family TFs
Other Takifugu rubripes TFs

189 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
gfi1b Tetraodon nigroviridis ENSTNIG00000003834 I 0.827
ENSONIG00000013011 Oreochromis niloticus ENSONIG00000013011 I 0.825
gfi1b Oryzias latipes ENSORLG00000014390 I 0.823
gfi1b Gasterosteus aculeatus ENSGACG00000018134 I 0.815
ENSPFOG00000003460 Poecilia formosa ENSPFOG00000003460 I 0.815
ENSGMOG00000019123 Gadus morhua ENSGMOG00000019123 I 0.814
ENSLOCG00000005750 Lepisosteus oculatus ENSLOCG00000005750 I 0.812
ENSAMXG00000016347 Astyanax mexicanus ENSAMXG00000016347 I 0.808
nAv.1.0.1.g05276 Acanthocheilonema viteae nAv.1.0.1.g05276 I 0.807
gfi1b Danio rerio ENSDARG00000079947 I 0.806
GFI1B Ochotona princeps ENSOPRG00000000125 I 0.804
GD12667 Drosophila simulans FBgn0184394 I 0.804
MESCA000812 Megaselia scalaris MESCA000812 I 0.804
GJ11823 Drosophila virilis FBgn0199077 I 0.804
GFI1B Homo sapiens ENSG00000165702 D 0.804
GM24598 Drosophila sechellia FBgn0179461 I 0.804
LCUP007432 Lucilia cuprina LCUP007432 I 0.804
GG13774 Drosophila erecta FBgn0106037 I 0.804
GE20069 Drosophila yakuba FBgn0237393 I 0.804
GFI1B Macaca mulatta ENSMMUG00000005948 I 0.804
GA28112 Drosophila pseudoobscura FBgn0249475 I 0.804
GK12454 Drosophila willistoni FBgn0214464 I 0.804
GA16696 Drosophila pseudoobscura FBgn0076711 I 0.804
GF10411 Drosophila ananassae FBgn0087452 I 0.804
GI13460 Drosophila mojavensis FBgn0136216 I 0.804
GH16734 Drosophila grimshawi FBgn0124205 I 0.804
GL15695 Drosophila persimilis FBgn0153299 I 0.804
GFI1B Callithrix jacchus ENSCJAG00000018071 I 0.804
sens Drosophila melanogaster FBgn0002573 D 0.804
PTRK_0000195600 Parastrongyloides trichosuri PTRK_0000195600 I 0.802
Bm9493 Brugia malayi Bm9493 I 0.802
SPAL_0000614400 Strongyloides papillosus SPAL_0000614400 I 0.802
RSKR_0000656700 Rhabditophanes kr3021 RSKR_0000656700 I 0.802
SSTP_0000165900 Strongyloides stercoralis SSTP_0000165900 I 0.802
WUBG_13248 Wuchereria bancrofti WUBG_13248 I 0.802
SVE_0901200 Strongyloides venezuelensis SVE_0901200 I 0.802
GFI1 Procavia capensis ENSPCAG00000011020 I 0.799
ACAC_0000515301 Angiostrongylus cantonensis ACAC_0000515301 I 0.799
ENSPTRG00000000961 Pan troglodytes ENSPTRG00000000961 I 0.799
BXY_1436800 Bursaphelenchus xylophilus BXY_1436800 I 0.799
gfi1b Xenopus tropicalis XB-GENE-944426 I 0.797
gfi1b.L Xenopus laevis XB-GENE-944429 I 0.797
MDOA006012 Musca domestica MDOA006012 I 0.794
HMEL012459 Heliconius melpomene HMEL012459 I 0.792
KGM_22443 Danaus plexippus KGM_22443 I 0.792
GFI1B Ornithorhynchus anatinus ENSOANG00000014723 I 0.792
LLOJ009104 Lutzomyia longipalpis LLOJ009104 I 0.792
ENSPSIG00000012112 Pelodiscus sinensis ENSPSIG00000012112 I 0.792
ENSLACG00000012207 Latimeria chalumnae ENSLACG00000012207 I 0.790
Cmyd_10017172 Chelonia mydas Cmyd_10017172 I 0.789
ENSMPUG00000012489 Mustela putorius furo ENSMPUG00000012489 I 0.787
GFI1B Dasypus novemcinctus ENSDNOG00000036528 I 0.787
GFI1B Cavia porcellus ENSCPOG00000026928 I 0.787
BGIBMGA003190 Bombyx mori BGIBMGA003190 I 0.787
AAEL000869 Aedes aegypti AAEL000869 I 0.787
ADIR005637 Anopheles dirus ADIR005637 I 0.787
NV16026 Nasonia vitripennis NV16026 I 0.787
AGAP010926 Anopheles gambiae AGAP010926 I 0.787
AFAF000823 Anopheles farauti AFAF000823 I 0.787
HCOI00212900 Haemonchus contortus HCOI00212900 I 0.787
ASTEI06414 Anopheles stephensi ASTEI06414 I 0.787
Tal_R001363 Tyto alba Tal_R001363 I 0.787
GFI1B Canis familiaris ENSCAFG00000019877 I 0.787
GB48486 Apis mellifera GB48486 I 0.787
AMEC011115 Anopheles melas AMEC011115 I 0.787
AATE011452 Anopheles atroparvus AATE011452 I 0.787
ACOM022805 Anopheles coluzzii ACOM022805 I 0.787
AMEM009379 Anopheles merus AMEM009379 I 0.787
Gfo_R007994 Geospiza fortis Gfo_R007994 I 0.786
Aan_R008865 Calypte anna Aan_R008865 I 0.786
Afo_R001655 Aptenodytes forsteri Afo_R001655 I 0.786
ENSFALG00000001479 Ficedula albicollis ENSFALG00000001479 I 0.786
GFI1B Gallus gallus ENSGALG00000003478 I 0.786
ENSAPLG00000003373 Anas platyrhynchos ENSAPLG00000003373 I 0.786
GFI1B Meleagris gallopavo ENSMGAG00000006129 I 0.786
Gfi1b Mus musculus ENSMUSG00000026815 D 0.785
GFI1B Sus scrofa ENSSSCG00000005737 I 0.785
ENSPANG00000024216 Papio anubis ENSPANG00000024216 I 0.785
GFI1B Felis catus ENSFCAG00000027147 I 0.785
MhA1_Contig1061.frz3.gene12 Meloidogyne hapla MhA1_Contig1061.frz3.gene12 I 0.785
ENSP00000361195 Macaca fascicularis ENSP00000361195 I 0.785
ENSCSAG00000015008 Chlorocebus sabaeus ENSCSAG00000015008 I 0.785
GFI1B Equus caballus ENSECAG00000008127 I 0.785
HelroG145685 Helobdella robusta HelroG145685 I 0.784
GFI1B Monodelphis domestica ENSMODG00000012600 I 0.784
Gfi1b Rattus norvegicus ENSRNOG00000011353 I 0.783
GFI1B Gorilla gorilla ENSGGOG00000015828 I 0.783
GFI1B Pan troglodytes ENSPTRG00000021505 I 0.783
ENSNLEG00000012963 Nomascus leucogenys ENSNLEG00000012963 I 0.783
GFI1B Oryctolagus cuniculus ENSOCUG00000001793 I 0.783
ENSPPYG00000019718 Pongo abelii ENSPPYG00000019718 I 0.783
GFI1B Procavia capensis ENSPCAG00000012329 I 0.783
PHUM248190 Pediculus humanus PHUM248190 I 0.782
Cflo_04170--XP_001120914.1_APIME Camponotus floridanus Cflo_04170--XP_001120914.1_APIME I 0.782
ENSSTOG00000022285 Ictidomys tridecemlineatus ENSSTOG00000022285 I 0.782
GFI1B Loxodonta africana ENSLAFG00000022367 I 0.782
PXEA_0001261301 Protopolystoma xenopodis PXEA_0001261301 I 0.781
TC013474 Tribolium castaneum TC013474 I 0.780
DILT_0000061901 Diphyllobothrium latum DILT_0000061901 I 0.779
SSLN_0000272801 Schistocephalus solidus SSLN_0000272801 I 0.779
L798_01833 Zootermopsis nevadensis L798_01833 I 0.779
GFI1B Bos taurus ENSBTAG00000012772 I 0.777
GFI1B Otolemur garnettii ENSOGAG00000008879 I 0.777
Gfi1b Dipodomys ordii ENSDORG00000000342 I 0.777
ENSBTAP00000016974-D1 Bos grunniens ENSBTAP00000016974-D1 I 0.777
LotgiG98465 Lottia gigantea LotgiG98465 I 0.776
SPU_012645 Strongylocentrotus purpuratus SPU_012645 I 0.775
Cmyd_10004881 Chelonia mydas Cmyd_10004881 I 0.774
ENSSTOG00000014583 Ictidomys tridecemlineatus ENSSTOG00000014583 I 0.774
GFI1 Loxodonta africana ENSLAFG00000018346 I 0.774
GFI1 Myotis lucifugus ENSMLUG00000015191 I 0.774
ENSLACG00000013362 Latimeria chalumnae ENSLACG00000013362 I 0.774
GFI1 Gorilla gorilla ENSGGOG00000005320 I 0.774
gfi1aa Gasterosteus aculeatus ENSGACG00000015674 I 0.774
ENSMMUG00000005068 Macaca mulatta ENSMMUG00000005068 I 0.774
ENSMPUG00000004178 Mustela putorius furo ENSMPUG00000004178 I 0.774
GFI1 Ochotona princeps ENSOPRG00000001473 I 0.774
GFI1 Otolemur garnettii ENSOGAG00000027913 I 0.774
ENSNLEG00000010470 Nomascus leucogenys ENSNLEG00000010470 I 0.774
Gfi1 Mus musculus ENSMUSG00000029275 D 0.774
GFI1 Homo sapiens ENSG00000162676 D 0.774
GFI1 Felis catus ENSFCAG00000005914 I 0.774
GFI1 Callithrix jacchus ENSCJAG00000017609 I 0.774
GFI1 Canis familiaris ENSCAFG00000020155 I 0.774
GFI1 Bos taurus ENSBTAG00000016723 I 0.774
ENSAMEG00000013858 Ailuropoda melanoleuca ENSAMEG00000013858 I 0.774
GFI1 Cavia porcellus ENSCPOG00000011727 I 0.774
gfi1aa Danio rerio ENSDARG00000020746 I 0.774
GFI1 Erinaceus europaeus ENSEEUG00000000198 I 0.774
GFI1 Equus caballus ENSECAG00000006647 I 0.774
GFI1 Dasypus novemcinctus ENSDNOG00000000782 I 0.774
gfi1ab Danio rerio ENSDARG00000044457 I 0.774
ENSPANG00000016433 Papio anubis ENSPANG00000016433 I 0.774
GFI1 Monodelphis domestica ENSMODG00000011802 I 0.774
GFI1 Sus scrofa ENSSSCG00000006902 I 0.774
Gfi1 Rattus norvegicus ENSRNOG00000002042 D 0.774
GFI1 Pteropus vampyrus ENSPVAG00000006928 I 0.774
GFI1 Tursiops truncatus ENSTTRG00000000082 I 0.774
Ogr09401 Ophisaurus gracilis Ogr09401 I 0.772
Pvit_00259 Pogona vitticeps Pvit_00259 I 0.772
GFI1 Anolis carolinensis ENSACAG00000004498 I 0.772
Tal_R006464 Tyto alba Tal_R006464 I 0.772
GFI1 Taeniopygia guttata ENSTGUG00000006060 I 0.772
GFI1 Meleagris gallopavo ENSMGAG00000008187 I 0.772
gfi1 Xenopus tropicalis XB-GENE-960553 I 0.772
GFI1B Myotis lucifugus ENSMLUG00000006673 I 0.772
Gfo_R010648 Geospiza fortis Gfo_R010648 I 0.772
Brh_R002465 Buceros rhinoceros Brh_R002465 I 0.772
ENSGALG00000005940 Gallus gallus ENSGALG00000005940 I 0.772
ENSONIG00000019246 Oreochromis niloticus ENSONIG00000019246 I 0.772
ENSPFOG00000023214 Poecilia formosa ENSPFOG00000023214 I 0.772
ENSAPLG00000015700 Anas platyrhynchos ENSAPLG00000015700 I 0.772
ENSPSIG00000008734 Pelodiscus sinensis ENSPSIG00000008734 I 0.772
CGI_10001094 Crassostrea gigas CGI_10001094 I 0.772
Alligator_sinensis_CCG007476.1 Alligator sinensis Alligator_sinensis_CCG007476.1 I 0.772
Afo_R006147 Aptenodytes forsteri Afo_R006147 I 0.772
ENSGMOG00000007737 Gadus morhua ENSGMOG00000007737 I 0.772
Aan_R000889 Calypte anna Aan_R000889 I 0.772
ENSLOCG00000004711 Lepisosteus oculatus ENSLOCG00000004711 I 0.770
ENSP00000399719 Macaca fascicularis ENSP00000399719 I 0.770
ENSBTAP00000022231-D1 Bos grunniens ENSBTAP00000022231-D1 I 0.770
gfi1aa Takifugu rubripes ENSTRUG00000004744 I 0.767
ENSXMAG00000009274 Xiphophorus maculatus ENSXMAG00000009274 I 0.767
gfi1aa Oryzias latipes ENSORLG00000005060 I 0.767
ENSPFOG00000017327 Poecilia formosa ENSPFOG00000017327 I 0.767
ENSONIG00000010573 Oreochromis niloticus ENSONIG00000010573 I 0.767
gfi1ab Tetraodon nigroviridis ENSTNIG00000000651 I 0.766
HelroG145534 Helobdella robusta HelroG145534 I 0.766
ENSGMOG00000017295 Gadus morhua ENSGMOG00000017295 I 0.765
gfi1ab Takifugu rubripes ENSTRUG00000000415 I 0.764
ENSAMXG00000004835 Astyanax mexicanus ENSAMXG00000004835 I 0.764
Myotis_brandtii_GFI1B_10010118 Myotis brandtii Myotis_brandtii_GFI1B_10010118 I 0.762
CGI_10011355 Crassostrea gigas CGI_10011355 I 0.761
HelroG67579 Helobdella robusta HelroG67579 I 0.760
e_gw.11.853.1 Branchiostoma floridae e_gw.11.853.1 I 0.757
tetur16g01570 Tetranychus urticae tetur16g01570 I 0.757
GK24242 Drosophila willistoni FBgn0226203 I 0.756
gfi1ab Gasterosteus aculeatus ENSGACG00000004257 I 0.756
GF15430 Drosophila ananassae FBgn0092455 I 0.756
GE14143 Drosophila yakuba FBgn0231766 I 0.756
GG10437 Drosophila erecta FBgn0102746 I 0.756
GH13715 Drosophila grimshawi FBgn0121191 I 0.756
GA16348 Drosophila pseudoobscura FBgn0076363 I 0.756
GL26188 Drosophila persimilis FBgn0163770 I 0.756
GM16223 Drosophila sechellia FBgn0171139 I 0.756
GJ21268 Drosophila virilis FBgn0208401 I 0.756
GI23984 Drosophila mojavensis FBgn0146708 I 0.756
sens-2 Drosophila melanogaster FBgn0051632 D 0.756
MDOA011065 Musca domestica MDOA011065 I 0.756