CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gfi1aa
(
Takifugu rubripes
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSTRUG00000004744
T112258_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
GFI1
M00238_2.00
Homo sapiens
NWAWMNNNN
NNNNKWTWN
PBM
Barrera et al.(2016)
GFI1_REF
0.799
0.928
GFI1
M04507_2.00
Homo sapiens
BMAATCACDGCNHBBCACTMN
NKAGTGVVDNGCHGTGATTKV
SELEX
Yin et al.(2017)
GFI1_eDBD_HT-SELEX
0.799
0.928
Gfi1
M02668_2.00
Rattus norvegicus
NMAATCWVHS
SDBWGATTKN
SELEX
Mathelier et al.(2014)
MA0038.1
0.799
0.928
GFI1
M08905_2.00
Homo sapiens
MAATCWSWGY
RCWSWGATTK
Misc
Kulakovskiy et al.(2013)
GFI1_HUMAN.H11MO.0.C
0.799
0.928
Gfi1
M08984_2.00
Mus musculus
MAATCWSWGY
RCWSWGATTK
Misc
Kulakovskiy et al.(2013)
GFI1_MOUSE.H11MO.0.C
0.799
0.928
GFI1
M10235_2.00
Homo sapiens
NNNNNNNRCHSWGATTTDNNBNNN
NNNVNNHAAATCWSDGYNNNNNNN
Transfac
Matys et al.(2006)
V$GFI1_01
0.799
0.928
GFI1
M10236_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GFI1_Q6_01
0.799
0.928
GFI1
M04508_2.00
Homo sapiens
NNAGTGVVNHGCWSTGATTKV
BMAATCASWGCDNBBCACTNN
SELEX
Yin et al.(2017)
GFI1_eDBD_Methyl-HT-SELEX
0.799
0.928
GFI1
M00236_2.00
Homo sapiens
NAATMNNNN
NNNNKATTN
PBM
Barrera et al.(2016)
GFI1_L400F
0.797
0.920
Gfi1b
M08098_2.00
Mus musculus
MAATCWCWGCH
DGCWGWGATTK
ChIP-seq
Mathelier et al.(2014)
MA0483.1
0.770
0.862
Gfi1b
M08977_2.00
Mus musculus
MAAYCACWGH
DCWGWGRTTK
Misc
Kulakovskiy et al.(2013)
GFI1B_MOUSE.H11MO.0.A
0.770
0.862
Gfi1b
M09514_2.00
Mus musculus
MAATCWSWGC
GCWSWGATTK
Misc
Heinz et al.(2010)
HPC7-Gfi1b_GSE22178
0.770
0.862
GFI1B
M00240_2.00
Homo sapiens
NNAAATCWSDN
NHSWGATTTNN
PBM
Barrera et al.(2016)
GFI1B_REF
0.768
0.855
GFI1B
M04523_2.00
Homo sapiens
NMAATCASDGCNNBBCACTNN
NNAGTGVVNNGCHSTGATTKN
SELEX
Yin et al.(2017)
GFI1B_eDBD_HT-SELEX
0.768
0.855
GFI1B
M08909_2.00
Homo sapiens
MAATCWSDGY
RCHSWGATTK
Misc
Kulakovskiy et al.(2013)
GFI1B_HUMAN.H11MO.0.A
0.768
0.855
GFI1B
M10243_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GFI1B_01
0.768
0.855
GFI1B
M10244_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GFI1B_Q6
0.768
0.855
GFI1B
M04524_2.00
Homo sapiens
NMAATCASWGCDNNBCACTHN
NDAGTGVNNHGCWSTGATTKN
SELEX
Yin et al.(2017)
GFI1B_eDBD_Methyl-HT-SELEX
0.768
0.855
sens-2
M06165_2.00
Drosophila melanogaster
RYAAATCWSDGCAYNC
GNRTGCHSWGATTTRY
B1H
Zhu et al.(2011)
sens-2_SANGER_2.5_FBgn0051632
0.765
0.841
GFI1
M00237_2.00
Homo sapiens
ATATCAVD
HBTGATAT
PBM
Barrera et al.(2016)
GFI1_N382S
0.762
0.920
GFI1B
M00239_2.00
Homo sapiens
NNAAATCWSDN
NHSWGATTTNN
PBM
Barrera et al.(2016)
GFI1B_A204T
0.758
0.848
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTRUP00000011298
C2H2 ZF
234
257
FKCVKCCKVFSTPHGLEVHVRRSH
ENSTRUP00000011298
C2H2 ZF
263
285
FECGVCGKTFGHAVSLDQHRAVH
ENSTRUP00000011298
C2H2 ZF
291
313
FSCKICGKSFKRSSTLSTHLLIH
ENSTRUP00000011298
C2H2 ZF
319
341
YPCQYCGKRFHQKSDMKKHTFIH
ENSTRUP00000011298
C2H2 ZF
347
369
HKCQVCGKAFSQSSNLITHSRKH
ENSTRUP00000011298
C2H2 ZF
375
398
FGCDLCGKGFQRKVDLRRHKETQH
Links
Other
C2H2 ZF
family TFs
Other
Takifugu rubripes
TFs
135 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSPFOG00000017327
Poecilia formosa
ENSPFOG00000017327
I
0.823
ENSXMAG00000009274
Xiphophorus maculatus
ENSXMAG00000009274
I
0.823
ENSONIG00000010573
Oreochromis niloticus
ENSONIG00000010573
I
0.823
gfi1aa
Oryzias latipes
ENSORLG00000005060
I
0.823
gfi1aa
Gasterosteus aculeatus
ENSGACG00000015674
I
0.815
gfi1aa
Danio rerio
ENSDARG00000020746
I
0.807
ENSGMOG00000017295
Gadus morhua
ENSGMOG00000017295
I
0.804
ENSGALG00000005940
Gallus gallus
ENSGALG00000005940
I
0.801
ENSGMOG00000007737
Gadus morhua
ENSGMOG00000007737
I
0.801
GFI1
Meleagris gallopavo
ENSMGAG00000008187
I
0.801
GFI1
Taeniopygia guttata
ENSTGUG00000006060
I
0.801
Gfo_R010648
Geospiza fortis
Gfo_R010648
I
0.801
Ogr09401
Ophisaurus gracilis
Ogr09401
I
0.801
Tal_R006464
Tyto alba
Tal_R006464
I
0.801
Brh_R002465
Buceros rhinoceros
Brh_R002465
I
0.801
Alligator_sinensis_CCG007476.1
Alligator sinensis
Alligator_sinensis_CCG007476.1
I
0.801
Aan_R000889
Calypte anna
Aan_R000889
I
0.801
Afo_R006147
Aptenodytes forsteri
Afo_R006147
I
0.801
ENSPFOG00000023214
Poecilia formosa
ENSPFOG00000023214
I
0.801
ENSONIG00000019246
Oreochromis niloticus
ENSONIG00000019246
I
0.801
GFI1
Anolis carolinensis
ENSACAG00000004498
I
0.801
ENSAPLG00000015700
Anas platyrhynchos
ENSAPLG00000015700
I
0.801
Gfi1
Mus musculus
ENSMUSG00000029275
D
0.799
ENSNLEG00000010470
Nomascus leucogenys
ENSNLEG00000010470
I
0.799
ENSAMEG00000013858
Ailuropoda melanoleuca
ENSAMEG00000013858
I
0.799
GFI1
Otolemur garnettii
ENSOGAG00000027913
I
0.799
ENSMPUG00000004178
Mustela putorius furo
ENSMPUG00000004178
I
0.799
ENSMMUG00000005068
Macaca mulatta
ENSMMUG00000005068
I
0.799
ENSSTOG00000014583
Ictidomys tridecemlineatus
ENSSTOG00000014583
I
0.799
ENSLOCG00000004711
Lepisosteus oculatus
ENSLOCG00000004711
I
0.799
GFI1
Myotis lucifugus
ENSMLUG00000015191
I
0.799
GFI1
Ochotona princeps
ENSOPRG00000001473
I
0.799
GFI1
Callithrix jacchus
ENSCJAG00000017609
I
0.799
GFI1
Pteropus vampyrus
ENSPVAG00000006928
I
0.799
Gfi1
Rattus norvegicus
ENSRNOG00000002042
D
0.799
GFI1
Bos taurus
ENSBTAG00000016723
I
0.799
GFI1
Dasypus novemcinctus
ENSDNOG00000000782
I
0.799
GFI1
Tursiops truncatus
ENSTTRG00000000082
I
0.799
GFI1
Loxodonta africana
ENSLAFG00000018346
I
0.799
ENSPANG00000016433
Papio anubis
ENSPANG00000016433
I
0.799
GFI1
Canis familiaris
ENSCAFG00000020155
I
0.799
GFI1
Sus scrofa
ENSSSCG00000006902
I
0.799
GFI1
Monodelphis domestica
ENSMODG00000011802
I
0.799
GFI1
Gorilla gorilla
ENSGGOG00000005320
I
0.799
GFI1
Felis catus
ENSFCAG00000005914
I
0.799
GFI1
Erinaceus europaeus
ENSEEUG00000000198
I
0.799
gfi1ab
Danio rerio
ENSDARG00000044457
I
0.799
ENSLACG00000013362
Latimeria chalumnae
ENSLACG00000013362
I
0.799
gfi1
Xenopus tropicalis
XB-GENE-960553
I
0.799
GFI1
Homo sapiens
ENSG00000162676
D
0.799
GFI1
Equus caballus
ENSECAG00000006647
I
0.799
ENSPSIG00000008734
Pelodiscus sinensis
ENSPSIG00000008734
I
0.798
Pvit_00259
Pogona vitticeps
Pvit_00259
I
0.798
GFI1
Cavia porcellus
ENSCPOG00000011727
I
0.796
Cmyd_10004881
Chelonia mydas
Cmyd_10004881
I
0.796
gfi1ab
Tetraodon nigroviridis
ENSTNIG00000000651
I
0.795
gfi1ab
Takifugu rubripes
ENSTRUG00000000415
I
0.793
ENSAMXG00000004835
Astyanax mexicanus
ENSAMXG00000004835
I
0.790
ENSBTAP00000022231-D1
Bos grunniens
ENSBTAP00000022231-D1
I
0.787
ENSP00000399719
Macaca fascicularis
ENSP00000399719
I
0.787
e_gw.11.853.1
Branchiostoma floridae
e_gw.11.853.1
I
0.784
gfi1b
Danio rerio
ENSDARG00000079947
I
0.782
gfi1ab
Gasterosteus aculeatus
ENSGACG00000004257
I
0.781
SPU_012645
Strongylocentrotus purpuratus
SPU_012645
I
0.778
Cmyd_10017172
Chelonia mydas
Cmyd_10017172
I
0.777
LotgiG129344
Lottia gigantea
LotgiG129344
I
0.776
ENSGMOG00000019123
Gadus morhua
ENSGMOG00000019123
I
0.776
Tal_R001363
Tyto alba
Tal_R001363
I
0.775
gfi1b
Gasterosteus aculeatus
ENSGACG00000018134
I
0.775
ENSLOCG00000005750
Lepisosteus oculatus
ENSLOCG00000005750
I
0.774
ENSPSIG00000012112
Pelodiscus sinensis
ENSPSIG00000012112
I
0.773
GFI1B
Meleagris gallopavo
ENSMGAG00000006129
I
0.773
ENSSTOG00000022285
Ictidomys tridecemlineatus
ENSSTOG00000022285
I
0.773
Gfo_R007994
Geospiza fortis
Gfo_R007994
I
0.773
ENSFALG00000001479
Ficedula albicollis
ENSFALG00000001479
I
0.773
Afo_R001655
Aptenodytes forsteri
Afo_R001655
I
0.773
ENSAPLG00000003373
Anas platyrhynchos
ENSAPLG00000003373
I
0.773
GFI1B
Gallus gallus
ENSGALG00000003478
I
0.773
Aan_R008865
Calypte anna
Aan_R008865
I
0.773
CGI_10011355
Crassostrea gigas
CGI_10011355
I
0.772
CapteG45287
Capitella teleta
CapteG45287
I
0.772
Gfi1b
Dipodomys ordii
ENSDORG00000000342
I
0.770
ENSPANG00000024216
Papio anubis
ENSPANG00000024216
I
0.770
ENSP00000361195
Macaca fascicularis
ENSP00000361195
I
0.770
Gfi1b
Mus musculus
ENSMUSG00000026815
D
0.770
ENSCSAG00000015008
Chlorocebus sabaeus
ENSCSAG00000015008
I
0.770
GFI1B
Cavia porcellus
ENSCPOG00000026928
I
0.770
ENSPPYG00000019718
Pongo abelii
ENSPPYG00000019718
I
0.768
GFI1B
Monodelphis domestica
ENSMODG00000012600
I
0.768
ENSLACG00000012207
Latimeria chalumnae
ENSLACG00000012207
I
0.768
GFI1B
Gorilla gorilla
ENSGGOG00000015828
I
0.768
ENSMPUG00000012489
Mustela putorius furo
ENSMPUG00000012489
I
0.768
ENSNLEG00000012963
Nomascus leucogenys
ENSNLEG00000012963
I
0.768
GFI1B
Callithrix jacchus
ENSCJAG00000018071
I
0.768
GFI1B
Oryctolagus cuniculus
ENSOCUG00000001793
I
0.768
GFI1B
Equus caballus
ENSECAG00000008127
I
0.768
GFI1B
Homo sapiens
ENSG00000165702
D
0.768
GFI1B
Pan troglodytes
ENSPTRG00000021505
I
0.768
GFI1B
Canis familiaris
ENSCAFG00000019877
I
0.768
GFI1B
Dasypus novemcinctus
ENSDNOG00000036528
I
0.768
Gfi1b
Rattus norvegicus
ENSRNOG00000011353
I
0.768
gfi1b
Tetraodon nigroviridis
ENSTNIG00000003834
I
0.767
gfi1b
Takifugu rubripes
ENSTRUG00000004525
I
0.767
GFI1B
Procavia capensis
ENSPCAG00000012329
I
0.766
tetur16g01570
Tetranychus urticae
tetur16g01570
I
0.766
GFI1B
Sus scrofa
ENSSSCG00000005737
I
0.766
GFI1B
Otolemur garnettii
ENSOGAG00000008879
I
0.766
GFI1B
Felis catus
ENSFCAG00000027147
I
0.766
GFI1B
Loxodonta africana
ENSLAFG00000022367
I
0.765
MDOA011065
Musca domestica
MDOA011065
I
0.765
ENSONIG00000013011
Oreochromis niloticus
ENSONIG00000013011
I
0.765
GH13715
Drosophila grimshawi
FBgn0121191
I
0.765
GI23984
Drosophila mojavensis
FBgn0146708
I
0.765
GG10437
Drosophila erecta
FBgn0102746
I
0.765
GF15430
Drosophila ananassae
FBgn0092455
I
0.765
sens-2
Drosophila melanogaster
FBgn0051632
D
0.765
GA16348
Drosophila pseudoobscura
FBgn0076363
I
0.765
GM16223
Drosophila sechellia
FBgn0171139
I
0.765
GL26188
Drosophila persimilis
FBgn0163770
I
0.765
GJ21268
Drosophila virilis
FBgn0208401
I
0.765
GE14143
Drosophila yakuba
FBgn0231766
I
0.765
GK24242
Drosophila willistoni
FBgn0226203
I
0.765
ENSPFOG00000003460
Poecilia formosa
ENSPFOG00000003460
I
0.765
Sakowv30015313m.g
Saccoglossus kowalevskii
Sakowv30015313m.g
I
0.763
gfi1b
Oryzias latipes
ENSORLG00000014390
I
0.763
LotgiG83709
Lottia gigantea
LotgiG83709
I
0.763
Sakowv30015302m.g
Saccoglossus kowalevskii
Sakowv30015302m.g
I
0.761
CGI_10017941
Crassostrea gigas
CGI_10017941
I
0.761
gfi1b.L
Xenopus laevis
XB-GENE-944429
I
0.761
gfi1b
Xenopus tropicalis
XB-GENE-944426
I
0.761
GFI1B
Ornithorhynchus anatinus
ENSOANG00000014723
I
0.760
GFI1B
Macaca mulatta
ENSMMUG00000005948
I
0.760
ENSBTAP00000016974-D1
Bos grunniens
ENSBTAP00000016974-D1
I
0.758
GFI1B
Bos taurus
ENSBTAG00000012772
I
0.758
GFI1B
Myotis lucifugus
ENSMLUG00000006673
I
0.757