CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gli2b
(
Takifugu rubripes
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSTRUG00000007692
T112322_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
GLI3
M04416_2.00
Homo sapiens
VGACCACCCACVNHG
CDNBGTGGGTGGTCB
SELEX
Yin et al.(2017)
GLI3_eDBD_HT-SELEX
0.797
0.965
GLI3
M02642_2.00
Homo sapiens
GACCACCCANK
MNTGGGTGGTC
SELEX
Hallikas et al.(2006)
GLI3
0.797
0.965
GLI3
M08875_2.00
Homo sapiens
VRACCACCCAV
BTGGGTGGTYB
Misc
Kulakovskiy et al.(2013)
GLI3_HUMAN.H11MO.0.B
0.797
0.965
GLI3
M10167_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI3_01
0.797
0.965
GLI3
M10168_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI3_Q5_01
0.797
0.965
GLI3
M04417_2.00
Homo sapiens
CWHBGTGGGTGGTCY
RGACCACCCACVDWG
SELEX
Yin et al.(2017)
GLI3_eDBD_Methyl-HT-SELEX
0.797
0.965
Gli2
M01024_2.00
Mus musculus
NGACCACCYN
NRGGTGGTCN
PBM
Peterson et al.(2012)
Gli2
0.779
0.922
GLI2
M02875_2.00
Homo sapiens
GMCCACMCANVNHB
VDNBNTGKGTGGKC
SELEX
Jolma et al.(2013)
GLI2_1
0.779
0.922
GLI2
M02876_2.00
Homo sapiens
GCGACCACVCWR
YWGBGTGGTCGC
SELEX
Jolma et al.(2013)
GLI2_2
0.779
0.922
GLI2
M02732_2.00
Homo sapiens
GACCACMCAN
NTGKGTGGTC
SELEX
Jolma et al.(2010)
GLI2_monomer
0.779
0.922
GLI2
M04402_2.00
Homo sapiens
VGACCACCCACVDHG
CDHBGTGGGTGGTCB
SELEX
Yin et al.(2017)
GLI2_eDBD_HT-SELEX
0.779
0.922
GLI2
M02641_2.00
Homo sapiens
GACCACCCAHG
CDTGGGTGGTC
SELEX
Hallikas et al.(2006)
GLI2
0.779
0.922
GLI2
M10114_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI2_Q3
0.779
0.922
GLI2
M10115_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI2_Q6
0.779
0.922
GLI2
M04403_2.00
Homo sapiens
RGACCACCCACVWWG
CWWBGTGGGTGGTCY
SELEX
Yin et al.(2017)
GLI2_eDBD_Methyl-HT-SELEX
0.779
0.922
Gli1
M01023_2.00
Mus musculus
NGACCACCHN
NDGGTGGTCN
PBM
Peterson et al.(2012)
Gli1
0.766
0.861
GLI1
M02643_2.00
Homo sapiens
GACCACCCAMG
CKTGGGTGGTC
SELEX
Hallikas et al.(2006)
GLI1
0.766
0.861
Gli1
M08976_2.00
Mus musculus
RGRCCACCCASV
BSTGGGTGGYCY
Misc
Kulakovskiy et al.(2013)
GLI1_MOUSE.H11MO.0.C
0.766
0.861
GLI1
M10176_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI1_Q2
0.766
0.861
GLI1
M10177_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI1_Q3_01
0.766
0.861
GLI1
M10178_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI1_Q3
0.766
0.861
GLI1
M10179_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI_Q6
0.766
0.861
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTRUP00000019088
C2H2 ZF
498
523
TNCHWENCCREFDTQEQLVQHINNDH
ENSTRUP00000019088
C2H2 ZF
531
558
FVCRWEDCSREQKPFKAQYMLVVHMRRH
ENSTRUP00000019088
C2H2 ZF
564
588
HKCTFEGCAKAYSRLENLKTHLRSH
ENSTRUP00000019088
C2H2 ZF
594
619
YVCEHEGCNKAFSNASDRAKHQNRTH
ENSTRUP00000019088
C2H2 ZF
625
650
YVCKIPGCTKRYTDPSSLRKHVKTVH
ENSTRUP00000019089
C2H2 ZF
453
478
TNCHWENCCREFDTQEQLVQHINNDH
ENSTRUP00000019089
C2H2 ZF
486
513
FVCRWEDCSREQKPFKAQYMLVVHMRRH
ENSTRUP00000019089
C2H2 ZF
519
543
HKCTFEGCAKAYSRLENLKTHLRSH
ENSTRUP00000019089
C2H2 ZF
549
574
YVCEHEGCNKAFSNASDRAKHQNRTH
ENSTRUP00000019089
C2H2 ZF
580
605
YVCKIPGCTKRYTDPSSLRKHVKTVH
ENSTRUP00000019090
C2H2 ZF
452
477
TNCHWENCCREFDTQEQLVQHINNDH
ENSTRUP00000019090
C2H2 ZF
485
512
FVCRWEDCSREQKPFKAQYMLVVHMRRH
ENSTRUP00000019090
C2H2 ZF
518
542
HKCTFEGCAKAYSRLENLKTHLRSH
ENSTRUP00000019090
C2H2 ZF
548
573
YVCEHEGCNKAFSNASDRAKHQNRTH
ENSTRUP00000019090
C2H2 ZF
579
604
YVCKIPGCTKRYTDPSSLRKHVKTVH
ENSTRUP00000019091
C2H2 ZF
379
404
TNCHWENCCREFDTQEQLVQHINNDH
ENSTRUP00000019091
C2H2 ZF
412
439
FVCRWEDCSREQKPFKAQYMLVVHMRRH
ENSTRUP00000019091
C2H2 ZF
445
469
HKCTFEGCAKAYSRLENLKTHLRSH
ENSTRUP00000019091
C2H2 ZF
475
500
YVCEHEGCNKAFSNASDRAKHQNRTH
ENSTRUP00000019091
C2H2 ZF
506
531
YVCKIPGCTKRYTDPSSLRKHVKTVH
ENSTRUP00000019092
C2H2 ZF
375
400
TNCHWENCCREFDTQEQLVQHINNDH
ENSTRUP00000019092
C2H2 ZF
408
435
FVCRWEDCSREQKPFKAQYMLVVHMRRH
ENSTRUP00000019092
C2H2 ZF
441
465
HKCTFEGCAKAYSRLENLKTHLRSH
ENSTRUP00000019092
C2H2 ZF
471
496
YVCEHEGCNKAFSNASDRAKHQNRTH
ENSTRUP00000019092
C2H2 ZF
502
527
YVCKIPGCTKRYTDPSSLRKHVKTVH
ENSTRUP00000019093
C2H2 ZF
307
332
TNCHWENCCREFDTQEQLVQHINNDH
ENSTRUP00000019093
C2H2 ZF
340
367
FVCRWEDCSREQKPFKAQYMLVVHMRRH
ENSTRUP00000019093
C2H2 ZF
373
397
HKCTFEGCAKAYSRLENLKTHLRSH
ENSTRUP00000019093
C2H2 ZF
403
428
YVCEHEGCNKAFSNASDRAKHQNRTH
ENSTRUP00000019093
C2H2 ZF
434
459
YVCKIPGCTKRYTDPSSLRKHVKTVH
ENSTRUP00000019094
C2H2 ZF
307
332
TNCHWENCCREFDTQEQLVQHINNDH
ENSTRUP00000019094
C2H2 ZF
340
367
FVCRWEDCSREQKPFKAQYMLVVHMRRH
ENSTRUP00000019094
C2H2 ZF
373
397
HKCTFEGCAKAYSRLENLKTHLRSH
ENSTRUP00000019094
C2H2 ZF
403
428
YVCEHEGCNKAFSNASDRAKHQNRTH
ENSTRUP00000019094
C2H2 ZF
434
459
YVCKIPGCTKRYTDPSSLRKHVKTVH
Links
Other
C2H2 ZF
family TFs
Other
Takifugu rubripes
TFs
164 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy