CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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znf143
(
Takifugu rubripes
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSTRUG00000009324
T112345_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZNF143
M02899_2.00
Homo sapiens
YWCCCAYAATGCAYYG
CRRTGCATTRTGGGWR
SELEX
Jolma et al.(2013)
ZNF143_1
0.814
0.919
ZNF143
M07931_2.00
Homo sapiens
RACTACAWYTCCCAG
CTGGGARWTGTAGTY
ChIP-seq
Gerstein et al.(2012)
GM12878_ZNF143_Stanford
0.814
0.919
ZNF143
M08910_2.00
Homo sapiens
RRACTACAWYTCCCAGVRKSCH
DGSMYBCTGGGARWTGTAGTYY
Misc
Kulakovskiy et al.(2013)
ZN143_HUMAN.H11MO.0.A
0.814
0.919
ZNF143
M09510_2.00
Homo sapiens
NNYTCCCAKVAKSCH
DGSMTBMTGGGARNN
Misc
Heinz et al.(2010)
CUTLL-ZNF143_GSE29600
0.814
0.919
ZNF143
M10247_2.00
Homo sapiens
NYYWCCCABMATGCAHYRCRNB
VNYGYRDTGCATKVTGGGWRRN
Transfac
Matys et al.(2006)
V$STAF_01
0.814
0.919
ZNF143
M10248_2.00
Homo sapiens
MHBWCCCAKVRTBCMWHGMRV
BYKCDWKGVAYBMTGGGWVDK
Transfac
Matys et al.(2006)
V$STAF_02
0.814
0.919
ZNF143
M10249_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$STAF_Q4_01
0.814
0.919
Zfp143
M09010_2.00
Mus musculus
RRACTACAWYTCCCAGVRKSCH
DGSMYBCTGGGARWTGTAGTYY
Misc
Kulakovskiy et al.(2013)
ZN143_MOUSE.H11MO.0.A
0.813
0.919
ZNF76
M04398_2.00
Homo sapiens
NNHWCCCABAATGCAHYRCRN
NYGYRDTGCATTVTGGGWDNN
SELEX
Yin et al.(2017)
ZNF76_eDBD_HT-SELEX
0.766
0.826
ZNF76
M08278_2.00
Homo sapiens
BCSCRNDGSMTBCTGGGARNT
ANYTCCCAGVAKSCHNYGSGV
ChIP-seq
Schmitges et al.(2016)
P36508_1-7.RCADE
0.766
0.826
ZNF76
M08856_2.00
Homo sapiens
ACTMCMHYTCCCAGVRKSCHHY
RDDGSMYBCTGGGARDKGKAGT
Misc
Kulakovskiy et al.(2013)
ZNF76_HUMAN.H11MO.0.C
0.766
0.826
ZNF76
M04399_2.00
Homo sapiens
NYTWCCCAYAATGCAHYRCDN
NHGYRDTGCATTRTGGGWARN
SELEX
Yin et al.(2017)
ZNF76_eDBD_Methyl-HT-SELEX
0.766
0.826
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTRUP00000023450
C2H2 ZF
264
288
FRCEYEGCGKLYTTAHHLKVHERSH
ENSTRUP00000023450
C2H2 ZF
294
318
YVCDFPGCGKKFATGYGLKSHSRTH
ENSTRUP00000023450
C2H2 ZF
324
348
YRCQELNCCKSFKTSGDLQKHTRTH
ENSTRUP00000023450
C2H2 ZF
354
378
FKCPIEGCGRSFTTSNIRKVHIRTH
ENSTRUP00000023450
C2H2 ZF
384
408
YYCSEPSCGRSFASATNYKNHMRIH
ENSTRUP00000023450
C2H2 ZF
414
438
YVCTVPGCQKRFTEYSSLYKHHVVH
ENSTRUP00000023450
C2H2 ZF
444
467
YNCNHCGKTYKQISTLAMHKRTAH
ENSTRUP00000023451
C2H2 ZF
224
248
FRCEYEGCGKLYTTAHHLKVHERSH
ENSTRUP00000023451
C2H2 ZF
254
278
YVCDFPGCGKKFATGYGLKSHSRTH
ENSTRUP00000023451
C2H2 ZF
284
308
YRCQELNCCKSFKTSGDLQKHTRTH
ENSTRUP00000023451
C2H2 ZF
314
338
FKCPIEGCGRSFTTSNIRKVHIRTH
ENSTRUP00000023451
C2H2 ZF
344
368
YYCSEPSCGRSFASATNYKNHMRIH
ENSTRUP00000023451
C2H2 ZF
374
398
YVCTVPGCQKRFTEYSSLYKHHVVH
ENSTRUP00000023451
C2H2 ZF
404
427
YNCNHCGKTYKQISTLAMHKRTAH
ENSTRUP00000023452
C2H2 ZF
250
274
FRCEYEGCGKLYTTAHHLKVHERSH
ENSTRUP00000023452
C2H2 ZF
280
304
YVCDFPGCGKKFATGYGLKSHSRTH
ENSTRUP00000023452
C2H2 ZF
310
334
YRCQELNCCKSFKTSGDLQKHTRTH
ENSTRUP00000023452
C2H2 ZF
340
364
FKCPIEGCGRSFTTSNIRKVHIRTH
ENSTRUP00000023452
C2H2 ZF
370
394
YYCSEPSCGRSFASATNYKNHMRIH
ENSTRUP00000023452
C2H2 ZF
400
424
YVCTVPGCQKRFTEYSSLYKHHVVH
ENSTRUP00000023452
C2H2 ZF
430
453
YNCNHCGKTYKQISTLAMHKRTAH
ENSTRUP00000023453
C2H2 ZF
197
221
FRCEYEGCGKLYTTAHHLKVHERSH
ENSTRUP00000023453
C2H2 ZF
227
251
YVCDFPGCGKKFATGYGLKSHSRTH
ENSTRUP00000023453
C2H2 ZF
257
281
YRCQELNCCKSFKTSGDLQKHTRTH
ENSTRUP00000023453
C2H2 ZF
287
311
FKCPIEGCGRSFTTSNIRKVHIRTH
ENSTRUP00000023453
C2H2 ZF
317
341
YYCSEPSCGRSFASATNYKNHMRIH
ENSTRUP00000023453
C2H2 ZF
347
371
YVCTVPGCQKRFTEYSSLYKHHVVH
ENSTRUP00000023453
C2H2 ZF
377
400
YNCNHCGKTYKQISTLAMHKRTAH
Links
Other
C2H2 ZF
family TFs
Other
Takifugu rubripes
TFs
115 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy