CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PRDM6
(
Takifugu rubripes
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSTRUG00000011582
T112383_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PRDM6
M08277_2.00
Homo sapiens
TTTTYYWBHHTTTYYHYTBYN
NRVARDRRAAADDVWRRAAAA
ChIP-seq
Schmitges et al.(2016)
Q9NQX0.MEME
0.762
0.966
PRDM6
M08855_2.00
Homo sapiens
NNKTTTTCYYBYB
VRVRRGAAAAMNN
Misc
Kulakovskiy et al.(2013)
PRDM6_HUMAN.H11MO.0.C
0.762
0.966
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTRUP00000029271
C2H2 ZF
479
499
WKCGQCFKTFTQRILLQMHVC
ENSTRUP00000029271
C2H2 ZF
507
529
YQCGHCSQSFSQPSDLRNHVVTH
ENSTRUP00000029271
C2H2 ZF
535
557
FKCGYCGRAFAGATTLNNHIRTH
ENSTRUP00000029271
C2H2 ZF
563
584
FKCERCDRSFTQATQLSRHQRL
Links
Other
C2H2 ZF
family TFs
Other
Takifugu rubripes
TFs
51 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy