CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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zic5
(
Takifugu rubripes
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSTRUG00000011797
T112391_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Zic5
M00780_2.00
Mus musculus
BRCCCCCYDS
SHRGGGGGYV
PBM
Weirauch et al.(2013)
pTH2818
0.816
0.955
ZIC5
M04471_2.00
Homo sapiens
NKACCCCCCGCTGHGH
DCDCAGCGGGGGGTMN
SELEX
Yin et al.(2017)
ZIC5_eDBD_HT-SELEX
0.806
0.945
ZIC5
M04472_2.00
Homo sapiens
NKACCCCCYGCTGTGM
KCACAGCRGGGGGTMN
SELEX
Yin et al.(2017)
ZIC5_eDBD_Methyl-HT-SELEX
0.806
0.945
Zic1
M00137_2.00
Mus musculus
NCMYVBNGNK
MNCNVBRKGN
PBM
Badis et al.(2009)
Zic1_0991
0.770
0.918
ZIC1
M02893_2.00
Homo sapiens
KRCCCCCYGCTGYG
CRCAGCRGGGGGYM
SELEX
Jolma et al.(2013)
ZIC1_1
0.770
0.918
ZIC1
M04485_2.00
Homo sapiens
BVCCMCCYGYHGYGH
DCRCDRCRGGKGGBV
SELEX
Yin et al.(2017)
ZIC1_eDBD_HT-SELEX
0.770
0.918
ZIC1
M04487_2.00
Homo sapiens
BVCCCCCYGCTGYGH
DCRCAGCRGGGGGBV
SELEX
Yin et al.(2017)
ZIC1_FL_HT-SELEX
0.770
0.918
ZIC1
M08900_2.00
Homo sapiens
BMSCHCCCM
KGGGDGSKV
Misc
Kulakovskiy et al.(2013)
ZIC1_HUMAN.H11MO.0.B
0.770
0.918
Zic1
M08990_2.00
Mus musculus
BMSCHCCCM
KGGGDGSKV
Misc
Kulakovskiy et al.(2013)
ZIC1_MOUSE.H11MO.0.B
0.770
0.918
ZIC1
M10226_2.00
Homo sapiens
KRCNMMCYV
BRGKKNGTM
Transfac
Matys et al.(2006)
V$ZIC1_01
0.770
0.918
ZIC1
M10227_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ZIC1_Q2
0.770
0.918
ZIC1
M04486_2.00
Homo sapiens
BACCCCCYRCTGTGM
KCACAGYRGGGGGTV
SELEX
Yin et al.(2017)
ZIC1_eDBD_Methyl-HT-SELEX
0.770
0.918
ZIC1
M04488_2.00
Homo sapiens
BRCCCCCTGCTGTGH
DCACAGCAGGGGGYV
SELEX
Yin et al.(2017)
ZIC1_FL_Methyl-HT-SELEX
0.770
0.918
ZIC4
M02912_2.00
Homo sapiens
KRCCCCCYGYDGNGH
DCNCHRCRGGGGGYM
SELEX
Jolma et al.(2013)
ZIC4_1
0.763
0.918
ZIC4
M04566_2.00
Homo sapiens
BVCMHCMYRYNRYGH
DCRYNRYRKGDKGBV
SELEX
Yin et al.(2017)
ZIC4_eDBD_HT-SELEX
0.763
0.918
ZIC4
M04567_2.00
Homo sapiens
BRCCHCCYRYBGTKH
DMACVRYRGGDGGYV
SELEX
Yin et al.(2017)
ZIC4_eDBD_Methyl-HT-SELEX
0.763
0.918
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTRUP00000029785
C2H2 ZF
272
290
CSKTYSTMHELVNHVTVEH
ENSTRUP00000029785
C2H2 ZF
299
326
HICFWEECPREGKAFKAKYKLINHIRVH
ENSTRUP00000029785
C2H2 ZF
332
356
FPCPFPGCGKVFARSENLKIHKRTH
ENSTRUP00000029785
C2H2 ZF
362
386
FKCEFDGCDRKFANSSDRKKHSHVH
ENSTRUP00000029785
C2H2 ZF
392
416
YYCKVRGCDKSYTHPSSLRKHMKVH
ENSTRUP00000029786
C2H2 ZF
282
300
CSKTYSTMHELVNHVTVEH
ENSTRUP00000029786
C2H2 ZF
309
336
HICFWEECPREGKAFKAKYKLINHIRVH
ENSTRUP00000029786
C2H2 ZF
342
366
FPCPFPGCGKVFARSENLKIHKRTH
ENSTRUP00000029786
C2H2 ZF
372
396
FKCEFDGCDRKFANSSDRKKHSHVH
ENSTRUP00000029786
C2H2 ZF
402
426
YYCKVRGCDKSYTHPSSLRKHMKVH
ENSTRUP00000029787
C2H2 ZF
181
199
CSKTYSTMHELVNHVTVEH
ENSTRUP00000029787
C2H2 ZF
208
235
HICFWEECPREGKAFKAKYKLINHIRVH
ENSTRUP00000029787
C2H2 ZF
241
265
FPCPFPGCGKVFARSENLKIHKRTH
ENSTRUP00000029787
C2H2 ZF
271
295
FKCEFDGCDRKFANSSDRKKHSHVH
ENSTRUP00000029787
C2H2 ZF
301
325
YYCKVRGCDKSYTHPSSLRKHMKVH
Links
Other
C2H2 ZF
family TFs
Other
Takifugu rubripes
TFs
173 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy