CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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bcl11ab
(
Takifugu rubripes
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSTRUG00000013751
T112417_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BCL11A
M07926_2.00
Homo sapiens
BTYTCASTTCCYYHH
DDRRGGAASTGARAV
ChIP-seq
Gerstein et al.(2012)
GM12878_BCL11A_HudsonAlpha
0.815
0.939
BCL11A
M08881_2.00
Homo sapiens
BHBYCABTTCCYBHNYN
NRNDVRGGAAVTGRVDV
Misc
Kulakovskiy et al.(2013)
BC11A_HUMAN.H11MO.0.A
0.815
0.939
BCL11A
M10187_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BCL11A_02
0.815
0.939
BCL11B
M04453_2.00
Homo sapiens
GTGAACGBNDNNVCTACAC
GTGTAGBNNHNVCGTTCAC
SELEX
Yin et al.(2017)
BCL11B_eDBD_HT-SELEX
0.811
0.921
BCL11B
M04454_2.00
Homo sapiens
GTGAACGBNDNHVCTACAC
GTGTAGBDNHNVCGTTCAC
SELEX
Yin et al.(2017)
BCL11B_eDBD_Methyl-HT-SELEX
0.811
0.921
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTRUP00000035120
C2H2 ZF
467
488
SCEFCGKTFKFQSNLIVHRRSH
ENSTRUP00000035120
C2H2 ZF
494
516
FKCHLCNHACTQASKLKRHMKTH
ENSTRUP00000035120
C2H2 ZF
807
829
DTCEFCGKVFKNCSNLTVHRRSH
ENSTRUP00000035120
C2H2 ZF
835
857
YKCELCSYACAQSSKLTRHMKTH
ENSTRUP00000035120
C2H2 ZF
865
888
YKCEICHMPFSVYSTLEKHMKKWH
ENSTRUP00000035121
C2H2 ZF
409
430
SCEFCGKTFKFQSNLIVHRRSH
ENSTRUP00000035121
C2H2 ZF
436
458
FKCHLCNHACTQASKLKRHMKTH
ENSTRUP00000035121
C2H2 ZF
749
771
DTCEFCGKVFKNCSNLTVHRRSH
ENSTRUP00000035121
C2H2 ZF
777
799
YKCELCSYACAQSSKLTRHMKTH
ENSTRUP00000035121
C2H2 ZF
807
830
YKCEICHMPFSVYSTLEKHMKKWH
ENSTRUP00000035122
C2H2 ZF
375
396
SCEFCGKTFKFQSNLIVHRRSH
ENSTRUP00000035122
C2H2 ZF
402
424
FKCHLCNHACTQASKLKRHMKTH
ENSTRUP00000035122
C2H2 ZF
715
737
DTCEFCGKVFKNCSNLTVHRRSH
ENSTRUP00000035122
C2H2 ZF
743
765
YKCELCSYACAQSSKLTRHMKTH
ENSTRUP00000035122
C2H2 ZF
773
796
YKCEICHMPFSVYSTLEKHMKKWH
ENSTRUP00000035123
C2H2 ZF
375
396
SCEFCGKTFKFQSNLIVHRRSH
ENSTRUP00000035123
C2H2 ZF
402
424
FKCHLCNHACTQASKLKRHMKTH
ENSTRUP00000035123
C2H2 ZF
699
721
DTCEFCGKVFKNCSNLTVHRRSH
ENSTRUP00000035123
C2H2 ZF
727
749
YKCELCSYACAQSSKLTRHMKTH
ENSTRUP00000035123
C2H2 ZF
757
780
YKCEICHMPFSVYSTLEKHMKKWH
Links
Other
C2H2 ZF
family TFs
Other
Takifugu rubripes
TFs
126 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy