CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gli1
(
Takifugu rubripes
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSTRUG00000014998
T112444_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Gli3
M01022_2.00
Mus musculus
NGACCACCCNN
NNGGGTGGTCN
PBM
Peterson et al.(2012)
Gli3
0.820
0.939
Gli3
M08023_2.00
Mus musculus
RGVCCACCCAS
STGGGTGGBCY
ChIP-seq
Chen et al.(2011)
GSE11062_Gli3
0.820
0.939
Gli3
M09512_2.00
Mus musculus
RGACCACCCASR
YSTGGGTGGTCY
Misc
Heinz et al.(2010)
Limb-GLI3_GSE11077
0.820
0.939
GLI3
M04416_2.00
Homo sapiens
VGACCACCCACVNHG
CDNBGTGGGTGGTCB
SELEX
Yin et al.(2017)
GLI3_eDBD_HT-SELEX
0.773
0.930
GLI3
M02642_2.00
Homo sapiens
GACCACCCANK
MNTGGGTGGTC
SELEX
Hallikas et al.(2006)
GLI3
0.773
0.930
GLI3
M08875_2.00
Homo sapiens
VRACCACCCAV
BTGGGTGGTYB
Misc
Kulakovskiy et al.(2013)
GLI3_HUMAN.H11MO.0.B
0.773
0.930
GLI3
M10167_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI3_01
0.773
0.930
GLI3
M10168_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI3_Q5_01
0.773
0.930
GLI3
M04417_2.00
Homo sapiens
CWHBGTGGGTGGTCY
RGACCACCCACVDWG
SELEX
Yin et al.(2017)
GLI3_eDBD_Methyl-HT-SELEX
0.773
0.930
Gli2
M01024_2.00
Mus musculus
NGACCACCYN
NRGGTGGTCN
PBM
Peterson et al.(2012)
Gli2
0.759
0.913
GLI2
M02875_2.00
Homo sapiens
GMCCACMCANVNHB
VDNBNTGKGTGGKC
SELEX
Jolma et al.(2013)
GLI2_1
0.759
0.913
GLI2
M02876_2.00
Homo sapiens
GCGACCACVCWR
YWGBGTGGTCGC
SELEX
Jolma et al.(2013)
GLI2_2
0.759
0.913
GLI2
M02732_2.00
Homo sapiens
GACCACMCAN
NTGKGTGGTC
SELEX
Jolma et al.(2010)
GLI2_monomer
0.759
0.913
GLI2
M04402_2.00
Homo sapiens
VGACCACCCACVDHG
CDHBGTGGGTGGTCB
SELEX
Yin et al.(2017)
GLI2_eDBD_HT-SELEX
0.759
0.913
GLI2
M02641_2.00
Homo sapiens
GACCACCCAHG
CDTGGGTGGTC
SELEX
Hallikas et al.(2006)
GLI2
0.759
0.913
GLI2
M10114_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI2_Q3
0.759
0.913
GLI2
M10115_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI2_Q6
0.759
0.913
GLI2
M04403_2.00
Homo sapiens
RGACCACCCACVWWG
CWWBGTGGGTGGTCY
SELEX
Yin et al.(2017)
GLI2_eDBD_Methyl-HT-SELEX
0.759
0.913
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTRUP00000038331
C2H2 ZF
320
345
TNCHWESCSKEFDTQDQLVHHINNEH
ENSTRUP00000038331
C2H2 ZF
353
380
FVCHWQECSREQRPFKAQYMLVVHMRRH
ENSTRUP00000038331
C2H2 ZF
386
410
HKCTFEGCNKAYSRLENLKTHLRSH
ENSTRUP00000038331
C2H2 ZF
416
441
YVCEHEGCNKAFSNASDRAKHQNRTH
ENSTRUP00000038331
C2H2 ZF
447
472
YVCKIPGCTKRYTDPSSLRKHVKTVH
ENSTRUP00000038332
C2H2 ZF
205
230
TNCHWESCSKEFDTQDQLVHHINNEH
ENSTRUP00000038332
C2H2 ZF
238
265
FVCHWQECSREQRPFKAQYMLVVHMRRH
ENSTRUP00000038332
C2H2 ZF
271
295
HKCTFEGCNKAYSRLENLKTHLRSH
ENSTRUP00000038332
C2H2 ZF
301
326
YVCEHEGCNKAFSNASDRAKHQNRTH
ENSTRUP00000038332
C2H2 ZF
332
357
YVCKIPGCTKRYTDPSSLRKHVKTVH
ENSTRUP00000038333
C2H2 ZF
204
229
TNCHWESCSKEFDTQDQLVHHINNEH
ENSTRUP00000038333
C2H2 ZF
237
264
FVCHWQECSREQRPFKAQYMLVVHMRRH
ENSTRUP00000038333
C2H2 ZF
270
294
HKCTFEGCNKAYSRLENLKTHLRSH
ENSTRUP00000038333
C2H2 ZF
300
325
YVCEHEGCNKAFSNASDRAKHQNRTH
ENSTRUP00000038333
C2H2 ZF
331
356
YVCKIPGCTKRYTDPSSLRKHVKTVH
ENSTRUP00000038334
C2H2 ZF
181
206
TNCHWESCSKEFDTQDQLVHHINNEH
ENSTRUP00000038334
C2H2 ZF
214
241
FVCHWQECSREQRPFKAQYMLVVHMRRH
ENSTRUP00000038334
C2H2 ZF
247
271
HKCTFEGCNKAYSRLENLKTHLRSH
ENSTRUP00000038334
C2H2 ZF
277
302
YVCEHEGCNKAFSNASDRAKHQNRTH
ENSTRUP00000038334
C2H2 ZF
308
333
YVCKIPGCTKRYTDPSSLRKHVKTVH
Links
Other
C2H2 ZF
family TFs
Other
Takifugu rubripes
TFs
139 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
gli1
Gasterosteus aculeatus
ENSGACG00000006458
I
0.827
ENSGMOG00000007975
Gadus morhua
ENSGMOG00000007975
I
0.827
gli1
Tetraodon nigroviridis
ENSTNIG00000007058
I
0.825
gli1
Oryzias latipes
ENSORLG00000005455
I
0.825
ENSPFOG00000006269
Poecilia formosa
ENSPFOG00000006269
I
0.825
ENSONIG00000005084
Oreochromis niloticus
ENSONIG00000005084
I
0.825
ENSXMAG00000017965
Xiphophorus maculatus
ENSXMAG00000017965
I
0.825
ENSSTOG00000020844
Ictidomys tridecemlineatus
ENSSTOG00000020844
I
0.820
Gli3
Rattus norvegicus
ENSRNOG00000014395
I
0.820
Gli3
Mus musculus
ENSMUSG00000021318
D
0.820
GLI3
Cavia porcellus
ENSCPOG00000013233
I
0.820
ENSLOCG00000002028
Lepisosteus oculatus
ENSLOCG00000002028
I
0.817
ENSONIG00000004472
Oreochromis niloticus
ENSONIG00000004472
I
0.817
ENSONIG00000003608
Oreochromis niloticus
ENSONIG00000003608
I
0.815
ENSPFOG00000014778
Poecilia formosa
ENSPFOG00000014778
I
0.814
ENSGMOG00000010335
Gadus morhua
ENSGMOG00000010335
I
0.814
gli2.S
Xenopus laevis
XB-GENE-6251939
I
0.813
gli2a
Danio rerio
ENSDARG00000025641
I
0.813
fgenesh2_pg.scaffold_169000072
Branchiostoma floridae
fgenesh2_pg.scaffold_169000072
I
0.809
fgenesh2_pg.scaffold_137000068
Branchiostoma floridae
fgenesh2_pg.scaffold_137000068
I
0.809
gli2.L
Xenopus laevis
XB-GENE-17342592
I
0.808
gli2b
Gasterosteus aculeatus
ENSGACG00000001547
I
0.807
gli2b
Takifugu rubripes
ENSTRUG00000001954
I
0.807
ENSAMXG00000017236
Astyanax mexicanus
ENSAMXG00000017236
I
0.779
ENSAMXG00000002477
Astyanax mexicanus
ENSAMXG00000002477
I
0.776
Pvit_05813
Pogona vitticeps
Pvit_05813
I
0.776
ENSLOCG00000005938
Lepisosteus oculatus
ENSLOCG00000005938
I
0.776
GLI1
Anolis carolinensis
ENSACAG00000006541
I
0.776
gli3
Danio rerio
ENSDARG00000052131
I
0.776
ENSLACG00000017364
Latimeria chalumnae
ENSLACG00000017364
I
0.774
ENSAPLG00000005128
Anas platyrhynchos
ENSAPLG00000005128
I
0.774
Tal_R009020
Tyto alba
Tal_R009020
I
0.774
Gfo_R013682
Geospiza fortis
Gfo_R013682
I
0.774
ENSNLEG00000003160
Nomascus leucogenys
ENSNLEG00000003160
I
0.773
GLI3
Ornithorhynchus anatinus
ENSOANG00000010699
I
0.773
ENSMPUG00000018143
Mustela putorius furo
ENSMPUG00000018143
I
0.773
GLI3
Otolemur garnettii
ENSOGAG00000012651
I
0.773
GLI3
Oryctolagus cuniculus
ENSOCUG00000006563
I
0.773
ENSOARG00000017420
Ovis aries
ENSOARG00000017420
I
0.773
Gfo_R007869
Geospiza fortis
Gfo_R007869
I
0.773
ENSPPYG00000017613
Pongo abelii
ENSPPYG00000017613
I
0.773
Brh_R008256
Buceros rhinoceros
Brh_R008256
I
0.773
ENSSHAG00000009727
Sarcophilus harrisii
ENSSHAG00000009727
I
0.773
Afo_R007816
Aptenodytes forsteri
Afo_R007816
I
0.773
GLI3
Tupaia belangeri
ENSTBEG00000006673
I
0.773
GLI3
Tursiops truncatus
ENSTTRG00000003628
I
0.773
ENSTSYG00000009406
Tarsius syrichta
ENSTSYG00000009406
I
0.773
Cmyd_10007839
Chelonia mydas
Cmyd_10007839
I
0.773
GLI3
Pteropus vampyrus
ENSPVAG00000015920
I
0.773
ENSP00000379258
Macaca fascicularis
ENSP00000379258
I
0.773
ENSPANG00000014545
Papio anubis
ENSPANG00000014545
I
0.773
GLI3
Procavia capensis
ENSPCAG00000015092
I
0.773
GLI3
Monodelphis domestica
ENSMODG00000002714
I
0.773
GLI3
Pan troglodytes
ENSPTRG00000019117
I
0.773
ENSPSIG00000017804
Pelodiscus sinensis
ENSPSIG00000017804
I
0.773
GLI3
Ochotona princeps
ENSOPRG00000011225
I
0.773
GLI3
Myotis lucifugus
ENSMLUG00000015711
I
0.773
ENSCSAG00000015361
Chlorocebus sabaeus
ENSCSAG00000015361
I
0.773
GLI3
Callithrix jacchus
ENSCJAG00000007690
I
0.773
GLI3
Choloepus hoffmanni
ENSCHOG00000003774
I
0.773
GLI3
Dasypus novemcinctus
ENSDNOG00000049286
I
0.773
ENSFALG00000005113
Ficedula albicollis
ENSFALG00000005113
I
0.773
Pvit_19093
Pogona vitticeps
Pvit_19093
I
0.773
GLI3
Felis catus
ENSFCAG00000011989
I
0.773
gli3.L
Xenopus laevis
XB-GENE-865509
I
0.773
GLI3
Canis familiaris
ENSCAFG00000003535
I
0.773
ENSAMEG00000008405
Ailuropoda melanoleuca
ENSAMEG00000008405
I
0.773
GLI3
Anolis carolinensis
ENSACAG00000017547
I
0.773
XP_002933450
Xenopus tropicalis
XP_002933450
I
0.773
ENSAPLG00000004361
Anas platyrhynchos
ENSAPLG00000004361
I
0.773
XP_002933449
Xenopus tropicalis
XP_002933449
I
0.773
GLI3
Bos taurus
ENSBTAG00000010671
I
0.773
GLI3
Homo sapiens
ENSG00000106571
D
0.773
GLI3
Equus caballus
ENSECAG00000009281
I
0.773
Aan_R014715
Calypte anna
Aan_R014715
I
0.773
GLI3
Gorilla gorilla
ENSGGOG00000002026
I
0.773
GLI3
Loxodonta africana
ENSLAFG00000008944
I
0.773
GLI3
Meleagris gallopavo
ENSMGAG00000012277
I
0.773
GLI3
Macaca mulatta
ENSMMUG00000013614
I
0.773
ENSMEUG00000013134
Macropus eugenii
ENSMEUG00000013134
I
0.773
ENSGALG00000012329
Gallus gallus
ENSGALG00000012329
I
0.773
Pvit_06470
Pogona vitticeps
Pvit_06470
I
0.771
GLI2
Anolis carolinensis
ENSACAG00000004133
I
0.771
gli2b
Danio rerio
ENSDARG00000020884
I
0.771
ENSAMXG00000006646
Astyanax mexicanus
ENSAMXG00000006646
I
0.771
ENSAMXG00000003125
Astyanax mexicanus
ENSAMXG00000003125
I
0.771
Ogr02489
Ophisaurus gracilis
Ogr02489
I
0.771
gli2b
Takifugu rubripes
ENSTRUG00000010444
I
0.771
gli1
Danio rerio
ENSDARG00000101244
I
0.769
ENSXMAG00000006443
Xiphophorus maculatus
ENSXMAG00000006443
I
0.768
Aan_R003640
Calypte anna
Aan_R003640
I
0.768
ENSAPLG00000015141
Anas platyrhynchos
ENSAPLG00000015141
I
0.768
GLI2
Taeniopygia guttata
ENSTGUG00000004599
I
0.768
GLI2
Meleagris gallopavo
ENSMGAG00000011872
I
0.768
Afo_R006826
Aptenodytes forsteri
Afo_R006826
I
0.768
Gfo_R001212
Geospiza fortis
Gfo_R001212
I
0.768
Tal_R006208
Tyto alba
Tal_R006208
I
0.768
ENSPFOG00000005116
Poecilia formosa
ENSPFOG00000005116
I
0.768
ENSFALG00000013217
Ficedula albicollis
ENSFALG00000013217
I
0.768
Cmyd_10009086
Chelonia mydas
Cmyd_10009086
I
0.768
ENSPSIG00000008752
Pelodiscus sinensis
ENSPSIG00000008752
I
0.768
Brh_R010932
Buceros rhinoceros
Brh_R010932
I
0.768
GLI2
Gallus gallus
ENSGALG00000011630
I
0.768
ENSMGAG00000003540
Meleagris gallopavo
ENSMGAG00000003540
I
0.765
ENSGALG00000014639
Gallus gallus
ENSGALG00000014639
I
0.765
GLI2
Otolemur garnettii
ENSOGAG00000032438
I
0.764
ENSLOCG00000011983
Lepisosteus oculatus
ENSLOCG00000011983
I
0.764
gli2b
Tetraodon nigroviridis
ENSTNIG00000017828
I
0.761
ENSMMUP00000002494
Macaca fascicularis
ENSMMUP00000002494
I
0.759
Myotis_brandtii_Gli2_10019076
Myotis brandtii
Myotis_brandtii_Gli2_10019076
I
0.759
ENSP00000390436-D1
Bos grunniens
ENSP00000390436-D1
I
0.759
GLI2
Oryctolagus cuniculus
ENSOCUG00000000638
I
0.759
GLI2
Felis catus
ENSFCAG00000014531
I
0.759
GLI2
Dasypus novemcinctus
ENSDNOG00000008730
I
0.759
GLI2
Homo sapiens
ENSG00000074047
D
0.759
GLI2
Macaca mulatta
ENSMMUG00000001868
I
0.759
GLI2
Monodelphis domestica
ENSMODG00000000245
I
0.759
ENSCSAG00000016668
Chlorocebus sabaeus
ENSCSAG00000016668
I
0.759
GLI2
Cavia porcellus
ENSCPOG00000015189
I
0.759
ENSAMEG00000008708
Ailuropoda melanoleuca
ENSAMEG00000008708
I
0.759
GLI2
Bos taurus
ENSBTAG00000011682
I
0.759
GLI2
Canis familiaris
ENSCAFG00000004821
I
0.759
ENSCJAG00000013342
Callithrix jacchus
ENSCJAG00000013342
I
0.759
gli2b
Tetraodon nigroviridis
ENSTNIG00000010251
I
0.759
ENSMPUG00000000986
Mustela putorius furo
ENSMPUG00000000986
I
0.759
Gli2
Mus musculus
ENSMUSG00000048402
D
0.759
ENSPPYG00000012778
Pongo abelii
ENSPPYG00000012778
I
0.759
GLI2
Pan troglodytes
ENSPTRG00000012413
I
0.759
Gli2
Rattus norvegicus
ENSRNOG00000007261
I
0.759
ENSSTOG00000004582
Ictidomys tridecemlineatus
ENSSTOG00000004582
I
0.759
ENSPANG00000024168
Papio anubis
ENSPANG00000024168
I
0.759
ENSNLEG00000000944
Nomascus leucogenys
ENSNLEG00000000944
I
0.759
GLI2
Sus scrofa
ENSSSCG00000015733
I
0.759
ENSOARG00000013052
Ovis aries
ENSOARG00000013052
I
0.759
ENSSHAG00000004233
Sarcophilus harrisii
ENSSHAG00000004233
I
0.759
GLI3
Echinops telfairi
ENSETEG00000003955
I
0.758
GLI3
Microcebus murinus
ENSMICG00000010785
I
0.758
GLI2
Procavia capensis
ENSPCAG00000001704
I
0.756