gli1 (Takifugu rubripes)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSTRUG00000014998 T112444_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Gli3
M01022_2.00 		Mus musculus
NGACCACCCNN
NNGGGTGGTCN		 PBM
Peterson et al.(2012)
Gli3 		0.820 0.939
Gli3
M08023_2.00 		Mus musculus
RGVCCACCCAS
STGGGTGGBCY		 ChIP-seq
Chen et al.(2011)
GSE11062_Gli3 		0.820 0.939
Gli3
M09512_2.00 		Mus musculus
RGACCACCCASR
YSTGGGTGGTCY		 Misc
Heinz et al.(2010)
Limb-GLI3_GSE11077 		0.820 0.939
GLI3
M04416_2.00 		Homo sapiens
VGACCACCCACVNHG
CDNBGTGGGTGGTCB		 SELEX
Yin et al.(2017)
GLI3_eDBD_HT-SELEX 		0.773 0.930
GLI3
M02642_2.00 		Homo sapiens
GACCACCCANK
MNTGGGTGGTC		 SELEX
Hallikas et al.(2006)
GLI3 		0.773 0.930
GLI3
M08875_2.00 		Homo sapiens
VRACCACCCAV
BTGGGTGGTYB		 Misc
Kulakovskiy et al.(2013)
GLI3_HUMAN.H11MO.0.B 		0.773 0.930
GLI3
M10167_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI3_01 		0.773 0.930
GLI3
M10168_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI3_Q5_01 		0.773 0.930
GLI3
M04417_2.00 		Homo sapiens
CWHBGTGGGTGGTCY
RGACCACCCACVDWG		 SELEX
Yin et al.(2017)
GLI3_eDBD_Methyl-HT-SELEX 		0.773 0.930
Gli2
M01024_2.00 		Mus musculus
NGACCACCYN
NRGGTGGTCN		 PBM
Peterson et al.(2012)
Gli2 		0.759 0.913
GLI2
M02875_2.00 		Homo sapiens
GMCCACMCANVNHB
VDNBNTGKGTGGKC		 SELEX
Jolma et al.(2013)
GLI2_1 		0.759 0.913
GLI2
M02876_2.00 		Homo sapiens
GCGACCACVCWR
YWGBGTGGTCGC		 SELEX
Jolma et al.(2013)
GLI2_2 		0.759 0.913
GLI2
M02732_2.00 		Homo sapiens
GACCACMCAN
NTGKGTGGTC		 SELEX
Jolma et al.(2010)
GLI2_monomer 		0.759 0.913
GLI2
M04402_2.00 		Homo sapiens
VGACCACCCACVDHG
CDHBGTGGGTGGTCB		 SELEX
Yin et al.(2017)
GLI2_eDBD_HT-SELEX 		0.759 0.913
GLI2
M02641_2.00 		Homo sapiens
GACCACCCAHG
CDTGGGTGGTC		 SELEX
Hallikas et al.(2006)
GLI2 		0.759 0.913
GLI2
M10114_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI2_Q3 		0.759 0.913
GLI2
M10115_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI2_Q6 		0.759 0.913
GLI2
M04403_2.00 		Homo sapiens
RGACCACCCACVWWG
CWWBGTGGGTGGTCY		 SELEX
Yin et al.(2017)
GLI2_eDBD_Methyl-HT-SELEX 		0.759 0.913
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000038331 C2H2 ZF 320 345
ENSTRUP00000038331 C2H2 ZF 353 380
ENSTRUP00000038331 C2H2 ZF 386 410
ENSTRUP00000038331 C2H2 ZF 416 441
ENSTRUP00000038331 C2H2 ZF 447 472
ENSTRUP00000038332 C2H2 ZF 205 230
ENSTRUP00000038332 C2H2 ZF 238 265
ENSTRUP00000038332 C2H2 ZF 271 295
ENSTRUP00000038332 C2H2 ZF 301 326
ENSTRUP00000038332 C2H2 ZF 332 357
ENSTRUP00000038333 C2H2 ZF 204 229
ENSTRUP00000038333 C2H2 ZF 237 264
ENSTRUP00000038333 C2H2 ZF 270 294
ENSTRUP00000038333 C2H2 ZF 300 325
ENSTRUP00000038333 C2H2 ZF 331 356
ENSTRUP00000038334 C2H2 ZF 181 206
ENSTRUP00000038334 C2H2 ZF 214 241
ENSTRUP00000038334 C2H2 ZF 247 271
ENSTRUP00000038334 C2H2 ZF 277 302
ENSTRUP00000038334 C2H2 ZF 308 333

Links

Other C2H2 ZF family TFs
Other Takifugu rubripes TFs

Invalid Input OrderBy

139 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action