CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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zic4
(
Takifugu rubripes
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSTRUG00000017765
T112482_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Zic1
M00137_2.00
Mus musculus
NCMYVBNGNK
MNCNVBRKGN
PBM
Badis et al.(2009)
Zic1_0991
0.805
0.938
ZIC1
M02893_2.00
Homo sapiens
KRCCCCCYGCTGYG
CRCAGCRGGGGGYM
SELEX
Jolma et al.(2013)
ZIC1_1
0.805
0.938
ZIC1
M04485_2.00
Homo sapiens
BVCCMCCYGYHGYGH
DCRCDRCRGGKGGBV
SELEX
Yin et al.(2017)
ZIC1_eDBD_HT-SELEX
0.805
0.938
ZIC1
M04487_2.00
Homo sapiens
BVCCCCCYGCTGYGH
DCRCAGCRGGGGGBV
SELEX
Yin et al.(2017)
ZIC1_FL_HT-SELEX
0.805
0.938
ZIC1
M08900_2.00
Homo sapiens
BMSCHCCCM
KGGGDGSKV
Misc
Kulakovskiy et al.(2013)
ZIC1_HUMAN.H11MO.0.B
0.805
0.938
Zic1
M08990_2.00
Mus musculus
BMSCHCCCM
KGGGDGSKV
Misc
Kulakovskiy et al.(2013)
ZIC1_MOUSE.H11MO.0.B
0.805
0.938
ZIC1
M10226_2.00
Homo sapiens
KRCNMMCYV
BRGKKNGTM
Transfac
Matys et al.(2006)
V$ZIC1_01
0.805
0.938
ZIC1
M10227_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ZIC1_Q2
0.805
0.938
ZIC1
M04486_2.00
Homo sapiens
BACCCCCYRCTGTGM
KCACAGYRGGGGGTV
SELEX
Yin et al.(2017)
ZIC1_eDBD_Methyl-HT-SELEX
0.805
0.938
ZIC1
M04488_2.00
Homo sapiens
BRCCCCCTGCTGTGH
DCACAGCAGGGGGYV
SELEX
Yin et al.(2017)
ZIC1_FL_Methyl-HT-SELEX
0.805
0.938
ZIC4
M02912_2.00
Homo sapiens
KRCCCCCYGYDGNGH
DCNCHRCRGGGGGYM
SELEX
Jolma et al.(2013)
ZIC4_1
0.803
0.955
ZIC4
M04566_2.00
Homo sapiens
BVCMHCMYRYNRYGH
DCRYNRYRKGDKGBV
SELEX
Yin et al.(2017)
ZIC4_eDBD_HT-SELEX
0.803
0.955
ZIC4
M04567_2.00
Homo sapiens
BRCCHCCYRYBGTKH
DMACVRYRGGDGGYV
SELEX
Yin et al.(2017)
ZIC4_eDBD_Methyl-HT-SELEX
0.803
0.955
Zic3
M00151_2.00
Mus musculus
NCMYVBNRNB
VNYNVBRKGN
PBM
Badis et al.(2009)
Zic3_3119
0.790
0.884
ZIC3
M02894_2.00
Homo sapiens
BACCCCCYGCKGYGH
DCRCMGCRGGGGGTV
SELEX
Jolma et al.(2013)
ZIC3_1
0.790
0.884
Zic3
M02936_2.00
Mus musculus
KRCCCCCYGCTGYGH
DCRCAGCRGGGGGYM
SELEX
Jolma et al.(2013)
Zic3_1
0.790
0.884
ZIC3
M04491_2.00
Homo sapiens
VGACCCCCYGCTGTGM
KCACAGCRGGGGGTCB
SELEX
Yin et al.(2017)
ZIC3_eDBD_HT-SELEX
0.790
0.884
ZIC3
M04493_2.00
Homo sapiens
BACCCCCYGCTGYGH
DCRCAGCRGGGGGTV
SELEX
Yin et al.(2017)
ZIC3_FL_HT-SELEX
0.790
0.884
ZIC3
M08902_2.00
Homo sapiens
NVVYHCCTGCTGDGN
NCHCAGCAGGDRBBN
Misc
Kulakovskiy et al.(2013)
ZIC3_HUMAN.H11MO.0.B
0.790
0.884
Zic3
M09013_2.00
Mus musculus
NVVYHCCTGCTGDGN
NCHCAGCAGGDRBBN
Misc
Kulakovskiy et al.(2013)
ZIC3_MOUSE.H11MO.0.A
0.790
0.884
ZIC3
M10229_2.00
Homo sapiens
VRBCMCCCN
NGGGKGVYB
Transfac
Matys et al.(2006)
V$ZIC3_01
0.790
0.884
Zic3
M10359_2.00
Mus musculus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ZIC3_07
0.790
0.884
ZIC3
M04492_2.00
Homo sapiens
NKACCCCCTGCTGTGM
KCACAGCAGGGGGTMN
SELEX
Yin et al.(2017)
ZIC3_eDBD_Methyl-HT-SELEX
0.790
0.884
ZIC3
M04494_2.00
Homo sapiens
BRCCCCCTGCTGTGM
KCACAGCAGGGGGYV
SELEX
Yin et al.(2017)
ZIC3_FL_Methyl-HT-SELEX
0.790
0.884
Zic2
M00150_2.00
Mus musculus
NCMYVYNRNN
NNYNRBRKGN
PBM
Badis et al.(2009)
Zic2_2895
0.782
0.911
ZIC2
M08233_2.00
Homo sapiens
BBCCTGCWGNB
VNCWGCAGGVV
ChIP-seq
Najafabadi et al.(2015b)
ZIC2
0.782
0.911
Zic2
M09011_2.00
Mus musculus
NRMYHCCTGCTGDGH
DCHCAGCAGGDRKYN
Misc
Kulakovskiy et al.(2013)
ZIC2_MOUSE.H11MO.0.C
0.782
0.911
ZIC2
M10107_2.00
Homo sapiens
VACCMCCCH
DGGGKGGTB
Transfac
Matys et al.(2006)
V$ZIC2_01
0.782
0.911
Zic5
M00780_2.00
Mus musculus
BRCCCCCYDS
SHRGGGGGYV
PBM
Weirauch et al.(2013)
pTH2818
0.766
0.911
ZIC5
M04471_2.00
Homo sapiens
NKACCCCCCGCTGHGH
DCDCAGCGGGGGGTMN
SELEX
Yin et al.(2017)
ZIC5_eDBD_HT-SELEX
0.756
0.902
ZIC5
M04472_2.00
Homo sapiens
NKACCCCCYGCTGTGM
KCACAGCRGGGGGTMN
SELEX
Yin et al.(2017)
ZIC5_eDBD_Methyl-HT-SELEX
0.756
0.902
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTRUP00000045531
C2H2 ZF
299
321
PKKLCSKTYSTMHELVTHVTVEH
ENSTRUP00000045531
C2H2 ZF
330
357
HICFWEECPREGKPFKAKYKLVNHIRVH
ENSTRUP00000045531
C2H2 ZF
363
387
FPCPFPGCGKVFARSENLKIHKRTH
ENSTRUP00000045531
C2H2 ZF
393
417
FKCEFDGCDRRFANSSDRKKHSHVH
ENSTRUP00000045531
C2H2 ZF
423
447
YNCKVRGCDKSYTHPSSLRKHMKVH
ENSTRUP00000045532
C2H2 ZF
280
302
PKKLCSKTYSTMHELVTHVTVEH
ENSTRUP00000045532
C2H2 ZF
311
338
HICFWEECPREGKPFKAKYKLVNHIRVH
ENSTRUP00000045532
C2H2 ZF
344
368
FPCPFPGCGKVFARSENLKIHKRTH
ENSTRUP00000045532
C2H2 ZF
374
398
FKCEFDGCDRRFANSSDRKKHSHVH
ENSTRUP00000045532
C2H2 ZF
404
428
YNCKVRGCDKSYTHPSSLRKHMKVH
ENSTRUP00000045533
C2H2 ZF
193
215
PKKLCSKTYSTMHELVTHVTVEH
ENSTRUP00000045533
C2H2 ZF
224
251
HICFWEECPREGKPFKAKYKLVNHIRVH
ENSTRUP00000045533
C2H2 ZF
257
281
FPCPFPGCGKVFARSENLKIHKRTH
ENSTRUP00000045533
C2H2 ZF
287
311
FKCEFDGCDRRFANSSDRKKHSHVH
ENSTRUP00000045533
C2H2 ZF
317
341
YNCKVRGCDKSYTHPSSLRKHMKVH
ENSTRUP00000045534
C2H2 ZF
177
199
PKKLCSKTYSTMHELVTHVTVEH
ENSTRUP00000045534
C2H2 ZF
208
235
HICFWEECPREGKPFKAKYKLVNHIRVH
ENSTRUP00000045534
C2H2 ZF
241
265
FPCPFPGCGKVFARSENLKIHKRTH
ENSTRUP00000045534
C2H2 ZF
271
295
FKCEFDGCDRRFANSSDRKKHSHVH
ENSTRUP00000045534
C2H2 ZF
301
325
YNCKVRGCDKSYTHPSSLRKHMKVH
ENSTRUP00000045535
C2H2 ZF
163
185
PKKLCSKTYSTMHELVTHVTVEH
ENSTRUP00000045535
C2H2 ZF
194
221
HICFWEECPREGKPFKAKYKLVNHIRVH
ENSTRUP00000045535
C2H2 ZF
227
251
FPCPFPGCGKVFARSENLKIHKRTH
ENSTRUP00000045535
C2H2 ZF
257
281
FKCEFDGCDRRFANSSDRKKHSHVH
ENSTRUP00000045535
C2H2 ZF
287
311
YNCKVRGCDKSYTHPSSLRKHMKVH
Links
Other
C2H2 ZF
family TFs
Other
Takifugu rubripes
TFs
259 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy