CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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im:7142702
(
Takifugu rubripes
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSTRUG00000018074
T112487_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BCL11B
M04453_2.00
Homo sapiens
GTGAACGBNDNNVCTACAC
GTGTAGBNNHNVCGTTCAC
SELEX
Yin et al.(2017)
BCL11B_eDBD_HT-SELEX
0.821
0.947
BCL11B
M04454_2.00
Homo sapiens
GTGAACGBNDNHVCTACAC
GTGTAGBDNHNVCGTTCAC
SELEX
Yin et al.(2017)
BCL11B_eDBD_Methyl-HT-SELEX
0.821
0.947
BCL11A
M07926_2.00
Homo sapiens
BTYTCASTTCCYYHH
DDRRGGAASTGARAV
ChIP-seq
Gerstein et al.(2012)
GM12878_BCL11A_HudsonAlpha
0.801
0.912
BCL11A
M08881_2.00
Homo sapiens
BHBYCABTTCCYBHNYN
NRNDVRGGAAVTGRVDV
Misc
Kulakovskiy et al.(2013)
BC11A_HUMAN.H11MO.0.A
0.801
0.912
BCL11A
M10187_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BCL11A_02
0.801
0.912
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTRUP00000046279
C2H2 ZF
347
368
SCEFCGKIFKFQSNLIVHRRSH
ENSTRUP00000046279
C2H2 ZF
374
396
YKCHLCDHACSQASKLKRHMKTH
ENSTRUP00000046279
C2H2 ZF
704
726
DTCEFCGKVFKNCSNLTVHRRSH
ENSTRUP00000046279
C2H2 ZF
732
754
YKCDLCSYACAQSSKLTRHMKTH
ENSTRUP00000046279
C2H2 ZF
762
785
YRCDICHMPFSVYSTLEKHMKKWH
ENSTRUP00000046280
C2H2 ZF
348
369
SCEFCGKIFKFQSNLIVHRRSH
ENSTRUP00000046280
C2H2 ZF
375
397
YKCHLCDHACSQASKLKRHMKTH
ENSTRUP00000046281
C2H2 ZF
417
438
SCEFCGKIFKFQSNLIVHRRSH
ENSTRUP00000046281
C2H2 ZF
444
466
YKCHLCDHACSQASKLKRHMKTH
ENSTRUP00000046281
C2H2 ZF
774
796
DTCEFCGKVFKNCSNLTVHRRSH
ENSTRUP00000046281
C2H2 ZF
802
824
YKCDLCSYACAQSSKLTRHMKTH
ENSTRUP00000046281
C2H2 ZF
832
855
YRCDICHMPFSVYSTLEKHMKKWH
ENSTRUP00000046282
C2H2 ZF
414
435
SCEFCGKIFKFQSNLIVHRRSH
ENSTRUP00000046282
C2H2 ZF
441
463
YKCHLCDHACSQASKLKRHMKTH
ENSTRUP00000046282
C2H2 ZF
747
769
DTCEFCGKVFKNCSNLTVHRRSH
ENSTRUP00000046282
C2H2 ZF
775
797
YKCDLCSYACAQSSKLTRHMKTH
ENSTRUP00000046282
C2H2 ZF
805
828
YRCDICHMPFSVYSTLEKHMKKWH
ENSTRUP00000046283
C2H2 ZF
378
399
SCEFCGKIFKFQSNLIVHRRSH
ENSTRUP00000046283
C2H2 ZF
405
427
YKCHLCDHACSQASKLKRHMKTH
ENSTRUP00000046283
C2H2 ZF
735
757
DTCEFCGKVFKNCSNLTVHRRSH
ENSTRUP00000046283
C2H2 ZF
763
785
YKCDLCSYACAQSSKLTRHMKTH
ENSTRUP00000046283
C2H2 ZF
793
816
YRCDICHMPFSVYSTLEKHMKKWH
Links
Other
C2H2 ZF
family TFs
Other
Takifugu rubripes
TFs
141 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy