CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ZNF140
(
Vicugna pacos
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSVPAG00000011394
T113663_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZNF140
M04621_2.00
Homo sapiens
DRCAATTCCGCTCN
NGAGCGGAATTGYH
SELEX
Yin et al.(2017)
ZNF140_eDBD_HT-SELEX
0.799
0.926
ZNF140
M08372_2.00
Homo sapiens
CAATTCYGCYCHNNNNNNNNNNNB
VNNNNNNNNNNNDGRGCRGAATTG
ChIP-seq
Schmitges et al.(2016)
P52738_3-10.RCADE
0.799
0.926
ZNF140
M08945_2.00
Homo sapiens
NNNDNYBYWGCAATTCYRCTCCHN
NDGGAGYRGAATTGCWRVRNHNNN
Misc
Kulakovskiy et al.(2013)
ZN140_HUMAN.H11MO.0.C
0.799
0.926
ZNF140
M04622_2.00
Homo sapiens
NRCAATTCCGCTCV
BGAGCGGAATTGYN
SELEX
Yin et al.(2017)
ZNF140_eDBD_Methyl-HT-SELEX
0.799
0.926
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSVPAP00000010612
C2H2 ZF
159
181
YGCQECGKTFSRRFSLVLHQRTH
ENSVPAP00000010612
C2H2 ZF
187
209
YVCKECGKTFSQISNLVKHQMIH
ENSVPAP00000010612
C2H2 ZF
215
237
HECKDCSKTFSYLSFLIEHQRTH
ENSVPAP00000010612
C2H2 ZF
243
265
YECTECGKAFSRASNLTRHQRIH
ENSVPAP00000010612
C2H2 ZF
271
293
YVCRKCGKAFSSGSELIRHQITH
ENSVPAP00000010612
C2H2 ZF
299
321
YECIECGKAFRRSSHLTRHQSVH
ENSVPAP00000010612
C2H2 ZF
327
349
YECGECSKAFRCHSFLIKHQRIH
ENSVPAP00000010612
C2H2 ZF
355
377
FECDECGKVFTWHASLAQHMKIH
ENSVPAP00000010612
C2H2 ZF
383
405
YACAECDKTFSRSFSLILHQITH
ENSVPAP00000010612
C2H2 ZF
411
433
YVCQVCSKSFSWSSNLAKHQRTH
Links
Other
C2H2 ZF
family TFs
Other
Vicugna pacos
TFs
27 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy