CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSXMAG00000008410
(
Xiphophorus maculatus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSXMAG00000008410
T113831_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Zfp410
M00140_2.00
Mus musculus
CYATCCCA
TGGGATRG
PBM
Badis et al.(2009)
Zfp410_3034
0.764
0.852
ZNF410
M02882_2.00
Homo sapiens
KVNTATTATGGGATGKN
NMCATCCCATAATANBM
SELEX
Jolma et al.(2013)
ZNF410_1
0.764
0.852
ZNF410
M04435_2.00
Homo sapiens
NTATTATGGGNTRB
VYANCCCATAATAN
SELEX
Yin et al.(2017)
ZNF410_eDBD_HT-SELEX
0.764
0.852
ZNF410
M04436_2.00
Homo sapiens
NTATTATGGGHTRB
VYADCCCATAATAN
SELEX
Yin et al.(2017)
ZNF410_eDBD_Methyl-HT-SELEX
0.764
0.852
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSXMAP00000008435
C2H2 ZF
222
246
LRCSFEGCGRTFTWPAHLKYHLKTH
ENSXMAP00000008435
C2H2 ZF
252
276
FQCSAEGCGKSFYVLQRLQVHMRTH
ENSXMAP00000008435
C2H2 ZF
282
306
FICKEKNCGKKFTTAGNLKNHRRIH
ENSXMAP00000008435
C2H2 ZF
312
336
FLCEADGCGRSFAEYSSLRKHMLVH
ENSXMAP00000008435
C2H2 ZF
342
365
HVCGICGKTFSQSGSRNVHMRKRH
Links
Other
C2H2 ZF
family TFs
Other
Xiphophorus maculatus
TFs
49 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy