CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ci
(
Drosophila melanogaster
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
FBgn0004859
T114419_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ci
M02644_2.00
Drosophila melanogaster
GACCACCCAMG
CKTGGGTGGTC
SELEX
Hallikas et al.(2006)
Ci
(Direct)
(Direct)
ci
M03672_2.00
Drosophila melanogaster
NCGMCCACMN
NKGTGGKCGN
SELEX
Nitta et al.(2015)
ci_1
(Direct)
(Direct)
ci
M06084_2.00
Drosophila melanogaster
RGMCCACMCAC
GTGKGTGGKCY
B1H
Zhu et al.(2011)
Ci_SANGER_5_FBgn0004859
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0088245
C2H2 ZF
451
476
TNCHWRSCRIEFITQDELVKHINNDH
FBpp0088245
C2H2 ZF
484
511
FVCRWEDCTRGEKPFKAQYMLVVHMRRH
FBpp0088245
C2H2 ZF
517
541
HKCTFEGCFKAYSRLENLKTHLRSH
FBpp0088245
C2H2 ZF
547
572
YTCEYPGCSKAFSNASDRAKHQNRTH
FBpp0088245
C2H2 ZF
578
603
YICKAPGCTKRYTDPSSLRKHVKTVH
FBpp0297298
C2H2 ZF
333
358
TNCHWRSCRIEFITQDELVKHINNDH
FBpp0297298
C2H2 ZF
366
393
FVCRWEDCTRGEKPFKAQYMLVVHMRRH
FBpp0297298
C2H2 ZF
399
423
HKCTFEGCFKAYSRLENLKTHLRSH
FBpp0297298
C2H2 ZF
429
454
YTCEYPGCSKAFSNASDRAKHQNRTH
FBpp0297298
C2H2 ZF
460
485
YICKAPGCTKRYTDPSSLRKHVKTVH
FBpp0300417
C2H2 ZF
451
476
TNCHWRSCRIEFITQDELVKHINNDH
FBpp0300417
C2H2 ZF
484
511
FVCRWEDCTRGEKPFKAQYMLVVHMRRH
Links
Other
C2H2 ZF
family TFs
Other
Drosophila melanogaster
TFs
49 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ci
Drosophila simulans
FBgn0012866
I
0.827
ci
Drosophila yakuba
FBgn0022826
I
0.827
GG16466
Drosophila erecta
FBgn0108697
I
0.827
GM23237
Drosophila sechellia
FBgn0178104
I
0.827
GH23992
Drosophila grimshawi
FBgn0131449
I
0.824
GK13666
Drosophila willistoni
FBgn0215674
I
0.822
GJ14655
Drosophila virilis
FBgn0201862
I
0.822
ACOM035918
Anopheles coluzzii
ACOM035918
N
0.820
AQUA005019
Anopheles quadriannulatus
AQUA005019
N
0.820
AARA011656
Anopheles arabiensis
AARA011656
N
0.820
AMEM001579
Anopheles merus
AMEM001579
N
0.820
AFUN004511
Anopheles funestus
AFUN004511
I
0.815
AFAF006125
Anopheles farauti
AFAF006125
I
0.815
LCUP015520
Lucilia cuprina
LCUP015520
I
0.815
AALB008266
Anopheles albimanus
AALB008266
I
0.815
ACHR002736
Anopheles christyi
ACHR002736
I
0.815
AMAM007692
Anopheles maculatus
AMAM007692
I
0.815
ACUA017715
Anopheles culicifacies
ACUA017715
I
0.815
ADIR005874
Anopheles dirus
ADIR005874
I
0.815
GA27838
Drosophila pseudoobscura
FBgn0249202
I
0.815
ADAC002075
Anopheles darlingi
ADAC002075
I
0.815
AGAP004637
Anopheles gambiae
AGAP004637
I
0.815
ASTEI06951
Anopheles stephensi
ASTEI06951
I
0.815
AAEL012039
Aedes aegypti
AAEL012039
I
0.815
GI14119
Drosophila mojavensis
FBgn0136873
I
0.815
ASIS001386
Anopheles sinensis
ASIS001386
I
0.815
AATE009625
Anopheles atroparvus
AATE009625
I
0.815
GL18388
Drosophila persimilis
FBgn0155989
I
0.815
AMIN000086
Anopheles minimus
AMIN000086
I
0.815
TC003000
Tribolium castaneum
TC003000
I
0.812
CPIJ000614
Culex quinquefasciatus
CPIJ000614
I
0.812
CpipJ_CPIJ000614
Culex pipiens
CpipJ_CPIJ000614
I
0.812
LotgiG119241
Lottia gigantea
LotgiG119241
I
0.786
GF19046
Drosophila ananassae
FBgn0096058
I
0.785
EmuJ_000711000
Echinococcus multilocularis
EmuJ_000711000
I
0.784
HmN_000840400
Hymenolepis microstoma
HmN_000840400
I
0.784
TsM_000018800
Taenia solium
TsM_000018800
I
0.782
B_00892
Schistosoma haematobium
B_00892
I
0.778
Sjc_0091950
Schistosoma japonicum
Sjc_0091950
I
0.769
DILT_0001859901
Diphyllobothrium latum
DILT_0001859901
N
0.767
SPER_0002418901
Spirometra erinaceieuropaei
SPER_0002418901
N
0.767
GB54885
Apis mellifera
GB54885
I
0.766
LDEC013937
Leptinotarsa decemlineata
LDEC013937
I
0.766
BGIBMGA004545
Bombyx mori
BGIBMGA004545
I
0.764
KGM_04065
Danaus plexippus
KGM_04065
I
0.764
L798_06214
Zootermopsis nevadensis
L798_06214
I
0.761
PHUM413310
Pediculus humanus
PHUM413310
I
0.759
ISCW005490
Ixodes scapularis
ISCW005490
I
0.757