lmd (Drosophila melanogaster)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 FBgn0039039 T114578_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
lmd
M00564_2.00		 Drosophila melanogaster
NNCCCCCCVS
SBGGGGGGNN		 PBM
Busser et al.(2012b)
Lmd		 (Direct) (Direct)
lmd
M03702_2.00		 Drosophila melanogaster
BVCCCCCCRCNDHSH
DSDHNGYGGGGGGBV		 SELEX
Nitta et al.(2015)
lmd_1		 (Direct) (Direct)
lmd
M06157_2.00		 Drosophila melanogaster
MVKVCCCCCYRCNG
CNGYRGGGGGBMBK		 B1H
Zhu et al.(2011)
lmd_SANGER_5_FBgn0039039		 (Direct) (Direct)
lmd
M06158_2.00		 Drosophila melanogaster
NNNMCCCCCYRSNRN
NYNSYRGGGGGKNNN		 B1H
Zhu et al.(2011)
lmd_SOLEXA_5_FBgn0039039		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.755 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00564_2.00 C2H2 ZF 32 57
M00564_2.00 C2H2 ZF 66 93
M00564_2.00 C2H2 ZF 100 123
M00564_2.00 C2H2 ZF 129 153
M00564_2.00 C2H2 ZF 159 183

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0083757 C2H2 ZF 435 460
FBpp0083757 C2H2 ZF 469 496
FBpp0083757 C2H2 ZF 503 526
FBpp0083757 C2H2 ZF 532 556
FBpp0083757 C2H2 ZF 562 586
FBpp0307995 C2H2 ZF 6 25
FBpp0307995 C2H2 ZF 31 55
FBpp0307995 C2H2 ZF 61 85

Links

Other C2H2 ZF family TFs
Other Drosophila melanogaster TFs

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24 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action