ovo (Drosophila virilis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 FBgn0064309 T114616_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ovo
M03669_2.00
Drosophila melanogaster
DNMCCGTTA

TAACGGKNH
SELEX
Nitta et al.(2015)
ovo_1
0.827 1.000
ovo
M06064_2.00
Drosophila melanogaster
CHGTTAHW

WDTAACDG
B1H
Zhu et al.(2011)
ovo_FlyReg_FBgn0003028
0.827 1.000
ovo
M06065_2.00
Drosophila melanogaster
RGTHCCGTTAT

ATAACGGDACY
B1H
Zhu et al.(2011)
ovo_SANGER_5_FBgn0003028
0.827 1.000
ovo
M06066_2.00
Drosophila melanogaster
DDTMCCGTTABNYN

NRNVTAACGGKAHH
B1H
Zhu et al.(2011)
ovo_SOLEXA_5_FBgn0003028
0.827 1.000
ovo
M02671_2.00
Drosophila melanogaster
DCNGTTWSD

HSWAACNGH
SELEX
Mathelier et al.(2014)
MA0126.1
0.827 1.000
ovo
M09662_2.00
Drosophila melanogaster
DCNGTTAMWNNDV

BHNNWKTAACNGH
Misc
Kulakovskiy et al.(2009)
ovo
0.827 1.000
ovo
M10373_2.00
Drosophila melanogaster
NNNDCNGTTWSDDNN

NNHHSWAACNGHNNN
Transfac
Matys et al.(2006)
I$OVO_01
0.827 1.000
ovo
M10374_2.00
Drosophila melanogaster Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$OVO_Q6
0.827 1.000
lin-48
M00614_2.00
Caenorhabditis elegans
HCCGTTAB

VTAACGGD
PBM
Narasimhan et al.(2015)
pTH9155
0.790 0.826
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0230208 C2H2 ZF 1456 1478
FBpp0230208 C2H2 ZF 1484 1506
FBpp0230208 C2H2 ZF 1512 1535

Links

Other C2H2 ZF family TFs
Other Drosophila virilis TFs

69 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aquca_040_00102 Aquilegia coerulea Aquca_040_00102 N 0.000
BGIOSGA016274 Oryza indica BGIOSGA016274 N 0.000
BRADI5G08167 Brachypodium distachyon BRADI5G08167 N 0.000
cassava42936.valid.m1 Manihot esculenta cassava42936.valid.m1 N 0.000
cassava6546.valid.m1 Manihot esculenta cassava6546.valid.m1 N 0.000
Ca_08511 Cicer arietinum Ca_08511 N 0.000
Ciclev10030636m.g Citrus clementina Ciclev10030636m.g N 0.000
Cucsa.349690 Cucumis sativus Cucsa.349690 N 0.000
Eucgr.H04623 Eucalyptus grandis Eucgr.H04623 N 0.000
F775_11712 Aegilops tauschii F775_11712 N 0.000
GLYMA05G28090 Glycine max GLYMA05G28090 N 0.000
GLYMA08G11080 Glycine max GLYMA08G11080 N 0.000
Gorai.009G332200 Gossypium raimondii Gorai.009G332200 N 0.000
GRMZM2G143205 Zea mays GRMZM2G143205 N 0.000
GSMUA_Achr9G01330_001 Musa acuminata GSMUA_Achr9G01330_001 N 0.000
LPERR04G07320 Leersia perrieri LPERR04G07320 N 0.000
MTR_8g080800 Medicago truncatula MTR_8g080800 N 0.000
OB04G17680 Oryza brachyantha OB04G17680 N 0.000
OBART04G10490 Oryza barthii OBART04G10490 N 0.000
OGLUM04G10170 Oryza glumaepatula OGLUM04G10170 N 0.000
OPUNC04G08570 Oryza punctata OPUNC04G08570 N 0.000
orange1.1g044976m.g Citrus sinensis orange1.1g044976m.g N 0.000
ORGLA02G0342600 Oryza glaberrima ORGLA02G0342600 N 0.000
ORGLA04G0075400 Oryza glaberrima ORGLA04G0075400 N 0.000
ORUFI04G11670 Oryza rufipogon ORUFI04G11670 N 0.000
OS04G0388500 Oryza sativa OS04G0388500 N 0.000
Pavir.Ga01952 Panicum virgatum Pavir.Ga01952 N 0.000
Pavir.Gb01963 Panicum virgatum Pavir.Gb01963 N 0.000
PDK_20s1550381g002 Phoenix dactylifera PDK_20s1550381g002 N 0.000
PK06349.1 Cannabis sativa PK06349.1 N 0.000
Pm007031 Prunus mume Pm007031 N 0.000
POPTR_0003s16910 Populus trichocarpa POPTR_0003s16910 N 0.000
PRUPE_ppa000516mg Prunus persica PRUPE_ppa000516mg N 0.000
SapurV1A.0056s0050 Salix purpurea SapurV1A.0056s0050 N 0.000
Sb06g013850 Sorghum bicolor Sb06g013850 N 0.000
Si009249m.g Setaria italica Si009249m.g N 0.000
Solyc05g015650.2 Solanum lycopersicum Solyc05g015650.2 N 0.000
TCM_008731 Theobroma cacao TCM_008731 N 0.000
Traes_2AL_773EA7A5A Triticum aestivum Traes_2AL_773EA7A5A N 0.000
Traes_2BL_A89BDB407 Triticum aestivum Traes_2BL_A89BDB407 N 0.000
Traes_2BS_AF4D5351B Triticum aestivum Traes_2BS_AF4D5351B N 0.000
Traes_2DL_474B433DF Triticum aestivum Traes_2DL_474B433DF N 0.000
TRIUR3_26386 Triticum urartu TRIUR3_26386 N 0.000
VIT_01s0010g03850 Vitis vinifera VIT_01s0010g03850 N 0.000