CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GA17730
(
Drosophila pseudoobscura
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
FBgn0077740
T114718_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
sug
M03688_2.00
Drosophila melanogaster
BVCCCCCCRCVDN
NHBGYGGGGGGBV
SELEX
Nitta et al.(2015)
sug_1
0.759
0.948
sug
M06132_2.00
Drosophila melanogaster
MNKRCCCCCCRSSG
CSSYGGGGGGYMNK
B1H
Zhu et al.(2011)
sug_SANGER_5_FBgn0033782
0.759
0.948
sug
M06133_2.00
Drosophila melanogaster
VVSMCCCCCCRCRRN
NYYGYGGGGGGKSBB
B1H
Zhu et al.(2011)
sug_SOLEXA_5_FBgn0033782
0.759
0.948
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0278428
C2H2 ZF
124
149
FICNWLECERVFETLEALAQHVTQRH
FBpp0278428
C2H2 ZF
159
186
YYCRWAGCQRSERGFNARYKMLVHTRTH
FBpp0278428
C2H2 ZF
192
214
HSCHLCEKSFSRAENLKIHIRSH
FBpp0278428
C2H2 ZF
220
244
YKCSFEGCQKAYSNSSDRFKHTRTH
FBpp0278428
C2H2 ZF
250
276
YMCKVAGCQKRYTDPSSLRKHVKTFKH
Links
Other
C2H2 ZF
family TFs
Other
Drosophila pseudoobscura
TFs
11 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GL17162
Drosophila persimilis
FBgn0154766
I
0.827
GK20769
Drosophila willistoni
FBgn0222765
I
0.816
GH20305
Drosophila grimshawi
FBgn0127769
I
0.809
GI19975
Drosophila mojavensis
FBgn0142712
I
0.809
GF12930
Drosophila ananassae
FBgn0089964
I
0.808
GM21434
Drosophila sechellia
FBgn0176315
I
0.806
GJ21228
Drosophila virilis
FBgn0208361
I
0.799
GE12506
Drosophila yakuba
FBgn0230244
I
0.769
sug
Drosophila melanogaster
FBgn0033782
D
0.759
GG20347
Drosophila erecta
FBgn0112538
I
0.759
GD10932
Drosophila simulans
FBgn0182695
I
0.759