CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GA27838
(
Drosophila pseudoobscura
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
FBgn0249202
T117197_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ci
M03672_2.00
Drosophila melanogaster
NCGMCCACMN
NKGTGGKCGN
SELEX
Nitta et al.(2015)
ci_1
0.815
0.948
ci
M06084_2.00
Drosophila melanogaster
RGMCCACMCAC
GTGKGTGGKCY
B1H
Zhu et al.(2011)
Ci_SANGER_5_FBgn0004859
0.815
0.948
ci
M02644_2.00
Drosophila melanogaster
GACCACCCAMG
CKTGGGTGGTC
SELEX
Hallikas et al.(2006)
Ci
0.815
0.948
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0285383
C2H2 ZF
465
490
TNCHWRSCGIEFMTQDELVKHINNDH
FBpp0285383
C2H2 ZF
498
525
FVCRWENCSRGEKPFKAQYMLVVHMRRH
FBpp0285383
C2H2 ZF
531
555
HKCTFEGCYKAYSRLENLKTHLRSH
FBpp0285383
C2H2 ZF
561
586
YTCEYPGCSKAFSNASDRAKHQNRTH
FBpp0285383
C2H2 ZF
592
617
YVCKAPGCTKRYTDPSSLRKHVKTVH
Links
Other
C2H2 ZF
family TFs
Other
Drosophila pseudoobscura
TFs
45 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy