rn (Drosophila melanogaster)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 FBgn0267337 T117235_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
rn
M03712_2.00
Drosophila melanogaster
BTTTTTWHV

BDWAAAAAV
SELEX
Nitta et al.(2015)
rn_1
(Direct) (Direct)
rn
M06180_2.00
Drosophila melanogaster
GBNHTBDSNNBNTTTTTTTKSDHHB

VDDHSMAAAAAAANVNNSHVADNVC
B1H
Zhu et al.(2011)
rn_SANGER_10_FBgn0259172
(Direct) (Direct)
rn
M06181_2.00
Drosophila melanogaster
NNNNBNNNNNNNDTTTTTTVNNNNB

VNNNNBAAAAAAHNNNNNNNVNNNN
B1H
Zhu et al.(2011)
rn_SOLEXA_5_FBgn0259172
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0288912 C2H2 ZF 263 285
FBpp0288912 C2H2 ZF 291 313
FBpp0288912 C2H2 ZF 319 343
FBpp0288912 C2H2 ZF 349 371
FBpp0288912 C2H2 ZF 380 402
FBpp0288914 C2H2 ZF 469 491
FBpp0288914 C2H2 ZF 498 520
FBpp0288914 C2H2 ZF 526 548
FBpp0288914 C2H2 ZF 554 578
FBpp0288914 C2H2 ZF 584 606
FBpp0288914 C2H2 ZF 615 637
FBpp0289745 C2H2 ZF 488 510
FBpp0289745 C2H2 ZF 517 539
FBpp0289745 C2H2 ZF 545 567
FBpp0289745 C2H2 ZF 573 597
FBpp0289745 C2H2 ZF 603 625
FBpp0289745 C2H2 ZF 634 656
FBpp0303173 C2H2 ZF 488 510
FBpp0303173 C2H2 ZF 517 539
FBpp0303173 C2H2 ZF 545 567
FBpp0303173 C2H2 ZF 573 597
FBpp0303173 C2H2 ZF 603 625
FBpp0303173 C2H2 ZF 634 656

Links

Other C2H2 ZF family TFs
Other Drosophila melanogaster TFs

52 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GD19488 Drosophila simulans FBgn0190985 I 0.827
GJ10241 Drosophila virilis FBgn0197528 N 0.827
GM10491 Drosophila sechellia FBgn0165439 N 0.827
GH19280 Drosophila grimshawi FBgn0126746 N 0.827
GF17309 Drosophila ananassae FBgn0094327 N 0.827
GK11085 Drosophila willistoni FBgn0213096 N 0.827
GE25797 Drosophila yakuba FBgn0242852 I 0.827
CLEC008150 Cimex lectularius CLEC008150 N 0.827
GG25249 Drosophila erecta FBgn0117371 I 0.827
GA26220 Drosophila pseudoobscura FBgn0247595 I 0.827
L798_13150 Zootermopsis nevadensis L798_13150 N 0.825
RPRC000740 Rhodnius prolixus RPRC000740 N 0.825
GI23490 Drosophila mojavensis FBgn0146216 N 0.823
ACEP11966 Atta cephalotes ACEP11966 N 0.819
NV18441 Nasonia vitripennis NV18441 N 0.819
SINV21632 Solenopsis invicta SINV21632 N 0.819
Cflo_10706--XP_392003.1_APIME Camponotus floridanus Cflo_10706--XP_392003.1_APIME N 0.819
GB54118 Apis mellifera GB54118 N 0.819
CPIJ020207 Culex quinquefasciatus CPIJ020207 N 0.817
CpipJ_CPIJ020207 Culex pipiens CpipJ_CPIJ020207 N 0.817
AFAF016561 Anopheles farauti AFAF016561 N 0.817
ASIS002621 Anopheles sinensis ASIS002621 N 0.817
LLOJ002296 Lutzomyia longipalpis LLOJ002296 N 0.817
AMAM023802 Anopheles maculatus AMAM023802 N 0.817
AFUN003758 Anopheles funestus AFUN003758 N 0.817
YQE_06536 Dendroctonus ponderosae YQE_06536 N 0.817
ACUA027622 Anopheles culicifacies ACUA027622 N 0.817
AATE004258 Anopheles atroparvus AATE004258 N 0.817
TC016018 Tribolium castaneum TC016018 N 0.817
AAEL002763 Aedes aegypti AAEL002763 N 0.817
AAEL015495 Aedes aegypti AAEL015495 N 0.817
MDOA008356 Musca domestica MDOA008356 N 0.792
AGAP002083 Anopheles gambiae AGAP002083 I 0.782
AMEC016152 Anopheles melas AMEC016152 N 0.773
AMEC018985 Anopheles melas AMEC018985 N 0.773
AMEM001627 Anopheles merus AMEM001627 N 0.773
AGAP002082 Anopheles gambiae AGAP002082 N 0.771
AMEM000733 Anopheles merus AMEM000733 N 0.771
AMEC019868 Anopheles melas AMEC019868 N 0.771
AMAM007515 Anopheles maculatus AMAM007515 N 0.771
AFUN003754 Anopheles funestus AFUN003754 N 0.771
ACOM042270 Anopheles coluzzii ACOM042270 N 0.771
AATE004381 Anopheles atroparvus AATE004381 N 0.771
ACUA022483 Anopheles culicifacies ACUA022483 N 0.771
ASIS011627 Anopheles sinensis ASIS011627 N 0.771
AFAF002247 Anopheles farauti AFAF002247 N 0.771
CPIJ013161 Culex quinquefasciatus CPIJ013161 N 0.769
ACYPI006067 Acyrthosiphon pisum ACYPI006067 N 0.769
SMAR014468 Strigamia maritima SMAR014468 N 0.769
CpipJ_CPIJ013161 Culex pipiens CpipJ_CPIJ013161 N 0.769
AAEL004799 Aedes aegypti AAEL004799 N 0.769