CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
rn
(
Drosophila melanogaster
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
FBgn0267337
T117235_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
rn
M03712_2.00
Drosophila melanogaster
BTTTTTWHV
BDWAAAAAV
SELEX
Nitta et al.(2015)
rn_1
(Direct)
(Direct)
rn
M06180_2.00
Drosophila melanogaster
GBNHTBDSNNBNTTTTTTTKSDHHB
VDDHSMAAAAAAANVNNSHVADNVC
B1H
Zhu et al.(2011)
rn_SANGER_10_FBgn0259172
(Direct)
(Direct)
rn
M06181_2.00
Drosophila melanogaster
NNNNBNNNNNNNDTTTTTTVNNNNB
VNNNNBAAAAAAHNNNNNNNVNNNN
B1H
Zhu et al.(2011)
rn_SOLEXA_5_FBgn0259172
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0288912
C2H2 ZF
263
285
YKCTQCSKAFANSSYLSQHTRIH
FBpp0288912
C2H2 ZF
291
313
YRCEICQRKFTQLSHLQQHIRTH
FBpp0288912
C2H2 ZF
319
343
YKCRHPGCQKAFSQLSNLQSHSRCH
FBpp0288912
C2H2 ZF
349
371
FKCNSCYKCFSDEPSLLEHIPKH
FBpp0288912
C2H2 ZF
380
402
HICQYCGKSYTQETYLTKHMQKH
FBpp0288914
C2H2 ZF
469
491
YQCKMCPQIFSSKADLQLHTQIH
FBpp0288914
C2H2 ZF
498
520
YKCTQCSKAFANSSYLSQHTRIH
FBpp0288914
C2H2 ZF
526
548
YRCEICQRKFTQLSHLQQHIRTH
FBpp0288914
C2H2 ZF
554
578
YKCRHPGCQKAFSQLSNLQSHSRCH
FBpp0288914
C2H2 ZF
584
606
FKCNSCYKCFSDEPSLLEHIPKH
FBpp0288914
C2H2 ZF
615
637
HICQYCGKSYTQETYLTKHMQKH
FBpp0289745
C2H2 ZF
488
510
YQCKMCPQIFSSKADLQLHTQIH
FBpp0289745
C2H2 ZF
517
539
YKCTQCSKAFANSSYLSQHTRIH
FBpp0289745
C2H2 ZF
545
567
YRCEICQRKFTQLSHLQQHIRTH
FBpp0289745
C2H2 ZF
573
597
YKCRHPGCQKAFSQLSNLQSHSRCH
FBpp0289745
C2H2 ZF
603
625
FKCNSCYKCFSDEPSLLEHIPKH
FBpp0289745
C2H2 ZF
634
656
HICQYCGKSYTQETYLTKHMQKH
FBpp0303173
C2H2 ZF
488
510
YQCKMCPQIFSSKADLQLHTQIH
FBpp0303173
C2H2 ZF
517
539
YKCTQCSKAFANSSYLSQHTRIH
FBpp0303173
C2H2 ZF
545
567
YRCEICQRKFTQLSHLQQHIRTH
FBpp0303173
C2H2 ZF
573
597
YKCRHPGCQKAFSQLSNLQSHSRCH
FBpp0303173
C2H2 ZF
603
625
FKCNSCYKCFSDEPSLLEHIPKH
FBpp0303173
C2H2 ZF
634
656
HICQYCGKSYTQETYLTKHMQKH
Links
Other
C2H2 ZF
family TFs
Other
Drosophila melanogaster
TFs
52 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy