fgenesh1_pg.C_scaffold_1000020 (Arabidopsis lyrata)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 fgenesh1_pg.C_scaffold_1000020 T117338_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.758 0.935
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_1000020 C2H2 ZF 136 158
fgenesh1_pg.C_scaffold_1000020 C2H2 ZF 183 205

Links

Other C2H2 ZF family TFs
Other Arabidopsis lyrata TFs

2 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.5325s0123 Boechera stricta Bostr.5325s0123 I 0.758
ZAT1 Arabidopsis thaliana AT1G02030 D 0.758