fgenesh1_pm.C_scaffold_6001805 (Arabidopsis lyrata)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 fgenesh1_pm.C_scaffold_6001805 T117343_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
STOP2
M06820_2.00
Arabidopsis thaliana
YAGATAHMACCTNHNHND

HNDNDNAGGTKDTATCTR
Dap-seq
OMalley et al.(2016)
At5g22890_col_a
0.827 1.000
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.C_scaffold_6001805 C2H2 ZF 300 322
fgenesh1_pm.C_scaffold_6001805 C2H2 ZF 323 352

Links

Other C2H2 ZF family TFs
Other Arabidopsis lyrata TFs

Invalid Input OrderBy

10 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action