fgenesh2_kg.6__2677__AT5G27880.1 (Arabidopsis lyrata)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 fgenesh2_kg.6__2677__AT5G27880.1 T117367_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.6__2677__AT5G27880.1 C2H2 ZF 78 100

Links

Other C2H2 ZF family TFs
Other Arabidopsis lyrata TFs

51 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_05447 Aegilops tauschii F775_05447 N 0.764
GIS2 Arabidopsis lyrata fgenesh2_kg.6__609__AT5G06650.1 I 0.765
GIS2 Arabidopsis thaliana AT5G06650 I 0.765
Bostr.13129s0308 Boechera stricta Bostr.13129s0308 I 0.765
Bostr.29827s0107 Boechera stricta Bostr.29827s0107 N 0.827
Bo2g007320 Brassica oleracea Bo2g007320 I 0.765
Bo2g155500 Brassica oleracea Bo2g155500 N 0.827
Bra028724 Brassica rapa Bra028724 I 0.765
Bra020571 Brassica rapa Bra020571 N 0.779
Carubv10003820m.g Capsella rubella Carubv10003820m.g I 0.765
Carubv10018785m.g Capsella rubella Carubv10018785m.g I 0.765
evm.TU.supercontig_1307.1 Carica papaya evm.TU.supercontig_1307.1 I 0.765
evm.TU.supercontig_51.84 Carica papaya evm.TU.supercontig_51.84 I 0.757
Ca_23376 Cicer arietinum Ca_23376 N 0.766
Ca_08116 Cicer arietinum Ca_08116 I 0.767
gene05263-v1.0-hybrid Fragaria vesca gene05263-v1.0-hybrid I 0.800
gene05169-v1.0-hybrid Fragaria vesca gene05169-v1.0-hybrid I 0.762
GLYMA19G40220 Glycine max GLYMA19G40220 I 0.762
GLYMA03G37610 Glycine max GLYMA03G37610 I 0.762
MLOC_4507 Hordeum vulgare MLOC_4507 I 0.802
MLOC_38864 Hordeum vulgare MLOC_38864 N 0.764
LPERR09G07930 Leersia perrieri LPERR09G07930 I 0.802
Lus10017229.g Linum usitatissimum Lus10017229.g I 0.765
MDP0000165710 Malus domestica MDP0000165710 I 0.762
MDP0000121370 Malus domestica MDP0000121370 I 0.762
MTR_2g067740 Medicago truncatula MTR_2g067740 N 0.766
OBART09G11250 Oryza barthii OBART09G11250 I 0.802
OB09G17800 Oryza brachyantha OB09G17800 I 0.802
ORGLA09G0084000 Oryza glaberrima ORGLA09G0084000 I 0.802
OGLUM09G11630 Oryza glumaepatula OGLUM09G11630 I 0.802
BGIOSGA029710 Oryza indica BGIOSGA029710 I 0.802
OLONG_006424 Oryza longistaminata OLONG_006424 I 0.802
OMERI09G08780 Oryza meridionalis OMERI09G08780 I 0.802
ONIVA09G10990 Oryza nivara ONIVA09G10990 I 0.802
OPUNC09G09720 Oryza punctata OPUNC09G09720 I 0.802
ORUFI09G12050 Oryza rufipogon ORUFI09G12050 I 0.802
OS09G0431900 Oryza sativa OS09G0431900 I 0.802
Pavir.Ha01090 Panicum virgatum Pavir.Ha01090 I 0.757
e_gw1.34.233.1 Physcomitrella patens e_gw1.34.233.1 I 0.764
Pm008291 Prunus mume Pm008291 I 0.762
30076.m004693 Ricinus communis 30076.m004693 I 0.774
SapurV1A.0052s0050 Salix purpurea SapurV1A.0052s0050 I 0.774
Si028367m.g Setaria italica Si028367m.g I 0.757
Solyc10g078990.1 Solanum lycopersicum Solyc10g078990.1 I 0.765
PGSC0003DMG400011450 Solanum tuberosum PGSC0003DMG400011450 I 0.765
Traes_5DL_B97546DA11 Triticum aestivum Traes_5DL_B97546DA11 I 0.802
Traes_5BL_3E6B0CD61 Triticum aestivum Traes_5BL_3E6B0CD61 I 0.802
Traes_5AL_81EFE5211 Triticum aestivum Traes_5AL_81EFE5211 I 0.802
TRIUR3_30765 Triticum urartu TRIUR3_30765 N 0.764
TRIUR3_22340 Triticum urartu TRIUR3_22340 I 0.802
GRMZM2G703281 Zea mays GRMZM2G703281 I 0.765