fgenesh_scip_prom.28083.941 (Phytophthora lateralis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 fgenesh_scip_prom.28083.941 T117401_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Phyra84400
M01183_2.00 		Phytophthora ramorum
HRHCKYCGGM
KCCGRMGDYD		 PBM
Lambert et al.(2019)
pTH11169 		0.824 0.989
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh_scip_prom.28083.941 C2H2 ZF 28 52
fgenesh_scip_prom.28083.941 C2H2 ZF 58 80
fgenesh_scip_prom.28083.941 C2H2 ZF 86 110
fgenesh_scip_prom.28083.941 C2H2 ZF 116 140

Links

Other C2H2 ZF family TFs
Other Phytophthora lateralis TFs

9 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Phyra84400 Phytophthora ramorum Phyra84400 D 0.824
HpaG807312 Hyaloperonospora arabidopsidis HpaG807312 I 0.821
F443_04535 Phytophthora parasitica F443_04535 I 0.821
Physo138577 Phytophthora sojae Physo138577 I 0.812
PITG_10525 Phytophthora infestans PITG_10525 I 0.809
estExt_Genewise1Plus.C_130008 Phytophthora capsici estExt_Genewise1Plus.C_130008 I 0.797
maker-pir_contig_583-fgenesh-gene-0.5 Pythium irregulare maker-pir_contig_583-fgenesh-gene-0.5 I 0.771
maker-piw_contig_2368-snap-gene-0.2 Pythium iwayamai maker-piw_contig_2368-snap-gene-0.2 I 0.768
maker-pve_contig_99-fgenesh-gene-0.14 Pythium vexans maker-pve_contig_99-fgenesh-gene-0.14 I 0.767