fgenesh_scip_prom.46568.8091 (Phytophthora kernoviae)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 fgenesh_scip_prom.46568.8091 T117419_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Phyra42912
M01181_2.00 		Phytophthora ramorum
RCSCATCHYN
NRDGATGSGY		 PBM
Lambert et al.(2019)
pTH11167 		0.788 0.913
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh_scip_prom.46568.8091 C2H2 ZF 84 108
fgenesh_scip_prom.46568.8091 C2H2 ZF 114 138
fgenesh_scip_prom.46568.8091 C2H2 ZF 144 168

Links

Other C2H2 ZF family TFs
Other Phytophthora kernoviae TFs

10 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
maker-pve_contig_642-snap-gene-0.15 Pythium vexans maker-pve_contig_642-snap-gene-0.15 I 0.811
fgenesh1_pg.C_scaffold_2000429 Phytophthora capsici fgenesh1_pg.C_scaffold_2000429 I 0.808
HpaG802957 Hyaloperonospora arabidopsidis HpaG802957 I 0.808
gw1.8.393.1 Phytophthora capsici gw1.8.393.1 I 0.800
maker-pag1_scaffold_440-fgenesh-gene-0.3 Pythium aphanidermatum maker-pag1_scaffold_440-fgenesh-gene-0.3 I 0.791
Phyra42912 Phytophthora ramorum Phyra42912 D 0.788
maker-pir_contig_54-snap-gene-0.26 Pythium irregulare maker-pir_contig_54-snap-gene-0.26 I 0.788
PITG_10815 Phytophthora infestans PITG_10815 I 0.784
F443_10717 Phytophthora parasitica F443_10717 I 0.784
ALNC14_012910 Albugo laibachii ALNC14_012910 I 0.781