GLYMA13G40860 (Glycine max)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 GLYMA13G40860 T118417_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.790 0.804
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.778 0.848
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.772 0.783
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.772 0.783
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.762 0.761
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.762 0.761
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.761 0.717
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GLYMA13G40860.2 C2H2 ZF 40 62
GLYMA13G40860.2 C2H2 ZF 90 112

Links

Other C2H2 ZF family TFs
Other Glycine max TFs

266 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA15G04570 Glycine max GLYMA15G04570 I 0.827
MTR_2g096540 Medicago truncatula MTR_2g096540 I 0.826
GLYMA11G15140 Glycine max GLYMA11G15140 I 0.802
Bo2g025350 Brassica oleracea Bo2g025350 I 0.800
Bra020284 Brassica rapa Bra020284 I 0.800
Carubv10018142m.g Capsella rubella Carubv10018142m.g I 0.790
fgenesh2_kg.5__981__AT3G46090.1 Arabidopsis lyrata fgenesh2_kg.5__981__AT3G46090.1 I 0.790
Bra006692 Brassica rapa Bra006692 I 0.790
Thhalv10014884m.g Eutrema salsugineum Thhalv10014884m.g I 0.790
Bra006691 Brassica rapa Bra006691 I 0.790
Bo9g140820 Brassica oleracea Bo9g140820 I 0.790
Bo3g017740 Brassica oleracea Bo3g017740 I 0.790
Cagra.1317s0034 Capsella grandiflora Cagra.1317s0034 I 0.790
ZAT7 Arabidopsis thaliana AT3G46090 D 0.790
ZAT8 Arabidopsis thaliana AT3G46080 I 0.790
Cagra.7309s0001 Capsella grandiflora Cagra.7309s0001 I 0.790
Bostr.26833s0254 Boechera stricta Bostr.26833s0254 I 0.790
Gorai.010G202400 Gossypium raimondii Gorai.010G202400 I 0.788
Eucgr.A01232 Eucalyptus grandis Eucgr.A01232 I 0.787
OPUNC05G16960 Oryza punctata OPUNC05G16960 I 0.783
OPUNC05G16930 Oryza punctata OPUNC05G16930 I 0.783
PGSC0003DMG400008327 Solanum tuberosum PGSC0003DMG400008327 I 0.780
scaffold_501490.1 Arabidopsis lyrata scaffold_501490.1 I 0.779
chr3.LjT39G24.10.nd Lotus japonicus chr3.LjT39G24.10.nd I 0.778
AT3G46070 Arabidopsis thaliana AT3G46070 D 0.778
Bra019477 Brassica rapa Bra019477 I 0.777
Bo1g067420 Brassica oleracea Bo1g067420 I 0.777
Carubv10018774m.g Capsella rubella Carubv10018774m.g I 0.777
Cagra.7309s0002 Capsella grandiflora Cagra.7309s0002 I 0.777
scaffold_401325.1 Arabidopsis lyrata scaffold_401325.1 I 0.776
Carubv10024179m.g Capsella rubella Carubv10024179m.g I 0.776
Thhalv10017375m.g Eutrema salsugineum Thhalv10017375m.g I 0.776
Bostr.27991s0045 Boechera stricta Bostr.27991s0045 I 0.776
Cagra.8274s0001 Capsella grandiflora Cagra.8274s0001 I 0.776
Thhalv10002839m.g Eutrema salsugineum Thhalv10002839m.g I 0.776
AT2G28710 Arabidopsis thaliana AT2G28710 I 0.776
Bra011931 Brassica rapa Bra011931 I 0.776
Bra035678 Brassica rapa Bra035678 I 0.776
Bo4g166690 Brassica oleracea Bo4g166690 I 0.776
Bo4g069230 Brassica oleracea Bo4g069230 I 0.776
Gorai.013G265200 Gossypium raimondii Gorai.013G265200 I 0.773
AT3G53600 Arabidopsis thaliana AT3G53600 D 0.772
Bostr.11793s0034 Boechera stricta Bostr.11793s0034 I 0.772
TCM_022001 Theobroma cacao TCM_022001 I 0.772
Eucgr.B02392 Eucalyptus grandis Eucgr.B02392 I 0.772
Cagra.0612s0086 Capsella grandiflora Cagra.0612s0086 I 0.772
Carubv10018114m.g Capsella rubella Carubv10018114m.g I 0.772
GLYMA19G35770 Glycine max GLYMA19G35770 I 0.772
Bo00576s170 Brassica oleracea Bo00576s170 I 0.772
Bra003148 Brassica rapa Bra003148 I 0.772
Eucgr.B02391 Eucalyptus grandis Eucgr.B02391 I 0.772
GLYMA03G33060 Glycine max GLYMA03G33060 I 0.772
GLYMA13G19570 Glycine max GLYMA13G19570 I 0.772
GLYMA10G05210 Glycine max GLYMA10G05210 I 0.772
fgenesh2_kg.5__1736__AT3G53600.1 Arabidopsis lyrata fgenesh2_kg.5__1736__AT3G53600.1 I 0.772
GLYMA03G33070 Glycine max GLYMA03G33070 I 0.772
MTR_7g100100 Medicago truncatula MTR_7g100100 I 0.771
cassava8924.m1 Manihot esculenta cassava8924.m1 I 0.771
Cla008415 Citrullus lanatus Cla008415 I 0.770
Eucgr.L02150 Eucalyptus grandis Eucgr.L02150 I 0.770
Eucgr.B02396 Eucalyptus grandis Eucgr.B02396 I 0.770
MDP0000170739 Malus domestica MDP0000170739 I 0.770
Cucsa.213470 Cucumis sativus Cucsa.213470 I 0.770
MDP0000606526 Malus domestica MDP0000606526 I 0.770
MDP0000224773 Malus domestica MDP0000224773 I 0.770
gene13962-v1.0-hybrid Fragaria vesca gene13962-v1.0-hybrid I 0.769
MDP0000595671 Malus domestica MDP0000595671 I 0.768
gene28452-v1.0-hybrid Fragaria vesca gene28452-v1.0-hybrid I 0.768
gene13960-v1.0-hybrid Fragaria vesca gene13960-v1.0-hybrid I 0.768
VIT_06s0009g02470 Vitis vinifera VIT_06s0009g02470 I 0.768
LjT09F05.130.nd Lotus japonicus LjT09F05.130.nd I 0.766
Eucgr.A01230 Eucalyptus grandis Eucgr.A01230 I 0.766
Sb09g022660 Sorghum bicolor Sb09g022660 I 0.766
AC206217.2_FG006 Zea mays AC206217.2_FG006 I 0.766
Bostr.18473s0333 Boechera stricta Bostr.18473s0333 I 0.766
Pavir.Ib01297 Panicum virgatum Pavir.Ib01297 I 0.765
PGSC0003DMG400023547 Solanum tuberosum PGSC0003DMG400023547 I 0.765
Aquca_010_00704 Aquilegia coerulea Aquca_010_00704 I 0.765
Pavir.Ia03651 Panicum virgatum Pavir.Ia03651 I 0.765
Aquca_027_00274 Aquilegia coerulea Aquca_027_00274 I 0.765
mgf023249m Mimulus guttatus mgf023249m I 0.765
PGSC0003DMG400023518 Solanum tuberosum PGSC0003DMG400023518 I 0.765
PGSC0003DMG400030311 Solanum tuberosum PGSC0003DMG400030311 I 0.765
VIT_13s0019g00480 Vitis vinifera VIT_13s0019g00480 I 0.765
SapurV1A.0095s0590 Salix purpurea SapurV1A.0095s0590 I 0.765
PRUPE_ppa011762mg Prunus persica PRUPE_ppa011762mg I 0.765
cassava16287.m1 Manihot esculenta cassava16287.m1 I 0.765
Solyc05g054660.1 Solanum lycopersicum Solyc05g054660.1 I 0.765
Solyc05g054650.1 Solanum lycopersicum Solyc05g054650.1 I 0.765
29585.m000611 Ricinus communis 29585.m000611 I 0.765
29154.m000218 Ricinus communis 29154.m000218 I 0.765
SapurV1A.0038s0750 Salix purpurea SapurV1A.0038s0750 I 0.765
Pm018761 Prunus mume Pm018761 I 0.765
Si037660m.g Setaria italica Si037660m.g I 0.765
Si023353m.g Setaria italica Si023353m.g I 0.765
cassava9455.m1 Manihot esculenta cassava9455.m1 I 0.765
POPTR_0010s21650 Populus trichocarpa POPTR_0010s21650 I 0.765
POPTR_0008s05110 Populus trichocarpa POPTR_0008s05110 I 0.765
SapurV1A.0040s0050 Salix purpurea SapurV1A.0040s0050 I 0.765
Sb09g001560 Sorghum bicolor Sb09g001560 I 0.765
Cla004091 Citrullus lanatus Cla004091 I 0.765
Pavir.Ca00650 Panicum virgatum Pavir.Ca00650 I 0.765
Cucsa.165460 Cucumis sativus Cucsa.165460 I 0.765
ONIVA05G01090 Oryza nivara ONIVA05G01090 I 0.765
GSMUA_Achr10G03700_001 Musa acuminata GSMUA_Achr10G03700_001 I 0.765
Eucgr.G02910 Eucalyptus grandis Eucgr.G02910 I 0.765
GRMZM2G112251 Zea mays GRMZM2G112251 I 0.765
GSMUA_Achr10G13540_001 Musa acuminata GSMUA_Achr10G13540_001 I 0.765
Thhalv10010956m.g Eutrema salsugineum Thhalv10010956m.g I 0.765
LPERR05G01000 Leersia perrieri LPERR05G01000 I 0.765
Eucgr.B02395 Eucalyptus grandis Eucgr.B02395 I 0.765
GSMUA_Achr6G15360_001 Musa acuminata GSMUA_Achr6G15360_001 I 0.765
PK27255.1 Cannabis sativa PK27255.1 I 0.765
GRMZM2G048154 Zea mays GRMZM2G048154 I 0.765
evm.TU.supercontig_190.30 Carica papaya evm.TU.supercontig_190.30 I 0.765
GLYMA02G10490 Glycine max GLYMA02G10490 I 0.765
gene26659-v1.0-hybrid Fragaria vesca gene26659-v1.0-hybrid I 0.765
chr5.CM0180.20.nc Lotus japonicus chr5.CM0180.20.nc I 0.765
evm.TU.contig_30912.1 Carica papaya evm.TU.contig_30912.1 I 0.765
GLYMA20G23180 Glycine max GLYMA20G23180 I 0.765
GLYMA18G52410 Glycine max GLYMA18G52410 I 0.765
GLYMA10G43630 Glycine max GLYMA10G43630 I 0.765
MDP0000137826 Malus domestica MDP0000137826 I 0.765
VIT_06s0004g04180 Vitis vinifera VIT_06s0004g04180 I 0.765
BGIOSGA018935 Oryza indica BGIOSGA018935 I 0.765
OPUNC05G00940 Oryza punctata OPUNC05G00940 I 0.765
Gorai.011G254300 Gossypium raimondii Gorai.011G254300 I 0.765
Gorai.013G023300 Gossypium raimondii Gorai.013G023300 I 0.765
ORGLA05G0010800 Oryza glaberrima ORGLA05G0010800 I 0.765
OS05G0114400 Oryza sativa OS05G0114400 I 0.765
ORUFI05G01070 Oryza rufipogon ORUFI05G01070 I 0.765
Lus10030330.g Linum usitatissimum Lus10030330.g I 0.765
Gorai.011G254200 Gossypium raimondii Gorai.011G254200 I 0.765
OMERI05G01120 Oryza meridionalis OMERI05G01120 I 0.765
MTR_7g023560 Medicago truncatula MTR_7g023560 I 0.765
Bo6g067580 Brassica oleracea Bo6g067580 I 0.765
SapurV1A.4260s0020 Salix purpurea SapurV1A.4260s0020 I 0.765
MDP0000257423 Malus domestica MDP0000257423 I 0.765
OBART05G01050 Oryza barthii OBART05G01050 I 0.765
OGLUM05G01060 Oryza glumaepatula OGLUM05G01060 I 0.765
Ciclev10029464m.g Citrus clementina Ciclev10029464m.g I 0.764
orange1.1g031430m.g Citrus sinensis orange1.1g031430m.g I 0.764
Gorai.003G136200 Gossypium raimondii Gorai.003G136200 I 0.764
POPTR_0009s03280 Populus trichocarpa POPTR_0009s03280 I 0.764
OGLUM03G12700 Oryza glumaepatula OGLUM03G12700 I 0.763
LPERR03G11200 Leersia perrieri LPERR03G11200 I 0.763
Eucgr.A01233 Eucalyptus grandis Eucgr.A01233 I 0.763
OMERI03G11850 Oryza meridionalis OMERI03G11850 I 0.763
OPUNC03G12220 Oryza punctata OPUNC03G12220 I 0.763
OS03G0279700 Oryza sativa OS03G0279700 I 0.763
ORUFI03G13310 Oryza rufipogon ORUFI03G13310 I 0.763
ORGLA03G0122200 Oryza glaberrima ORGLA03G0122200 I 0.763
Eucgr.B02390 Eucalyptus grandis Eucgr.B02390 I 0.763
Eucgr.B02394 Eucalyptus grandis Eucgr.B02394 I 0.763
gene18205-v1.0-hybrid Fragaria vesca gene18205-v1.0-hybrid I 0.763
BGIOSGA010987 Oryza indica BGIOSGA010987 I 0.763
MDP0000237150 Malus domestica MDP0000237150 I 0.763
gene18204-v1.0-hybrid Fragaria vesca gene18204-v1.0-hybrid I 0.763
F775_52535 Aegilops tauschii F775_52535 I 0.763
Eucgr.B02397 Eucalyptus grandis Eucgr.B02397 I 0.763
Eucgr.B02399 Eucalyptus grandis Eucgr.B02399 I 0.763
PRUPE_ppa022066mg Prunus persica PRUPE_ppa022066mg I 0.763
ONIVA01G18540 Oryza nivara ONIVA01G18540 I 0.763
Pm002762 Prunus mume Pm002762 I 0.763
Pm000815 Prunus mume Pm000815 I 0.763
Traes_1DS_CE96E8BF0 Triticum aestivum Traes_1DS_CE96E8BF0 I 0.763
Traes_1BS_22E395F75 Triticum aestivum Traes_1BS_22E395F75 I 0.763
cassava42054.valid.m1 Manihot esculenta cassava42054.valid.m1 I 0.763
Traes_4AS_D4763E468 Triticum aestivum Traes_4AS_D4763E468 I 0.763
Traes_1AS_B282BFB83 Triticum aestivum Traes_1AS_B282BFB83 I 0.763
GRMZM5G804618 Zea mays GRMZM5G804618 I 0.762
Cla013490 Citrullus lanatus Cla013490 I 0.762
Thhalv10017303m.g Eutrema salsugineum Thhalv10017303m.g I 0.762
LPERR01G31460 Leersia perrieri LPERR01G31460 I 0.762
OGLUM01G40470 Oryza glumaepatula OGLUM01G40470 I 0.762
MTR_1g067650 Medicago truncatula MTR_1g067650 I 0.762
GLYMA19G35740 Glycine max GLYMA19G35740 I 0.762
GSMUA_Achr9G03210_001 Musa acuminata GSMUA_Achr9G03210_001 I 0.762
GLYMA03G33050 Glycine max GLYMA03G33050 I 0.762
Gorai.006G176000 Gossypium raimondii Gorai.006G176000 I 0.762
Gorai.006G104800 Gossypium raimondii Gorai.006G104800 I 0.762
Gorai.006G176100 Gossypium raimondii Gorai.006G176100 I 0.762
Gorai.012G006900 Gossypium raimondii Gorai.012G006900 I 0.762
BGIOSGA000523 Oryza indica BGIOSGA000523 I 0.762
Bra039806 Brassica rapa Bra039806 I 0.762
LjSGA_020980.2 Lotus japonicus LjSGA_020980.2 I 0.762
evm.TU.supercontig_163.32 Carica papaya evm.TU.supercontig_163.32 I 0.762
gene13959-v1.0-hybrid Fragaria vesca gene13959-v1.0-hybrid I 0.762
fgenesh2_kg.4__1796__AT2G37430.1 Arabidopsis lyrata fgenesh2_kg.4__1796__AT2G37430.1 I 0.762
SapurV1A.0008s0970 Salix purpurea SapurV1A.0008s0970 I 0.762
GLYMA10G05190 Glycine max GLYMA10G05190 I 0.762
MTR_1g067640 Medicago truncatula MTR_1g067640 I 0.762
POPTR_0001s24250 Populus trichocarpa POPTR_0001s24250 I 0.762
ORUFI01G40000 Oryza rufipogon ORUFI01G40000 I 0.762
TCM_041899 Theobroma cacao TCM_041899 I 0.762
OS01G0838600 Oryza sativa OS01G0838600 I 0.762
OMERI01G33680 Oryza meridionalis OMERI01G33680 I 0.762
orange1.1g031966m.g Citrus sinensis orange1.1g031966m.g I 0.762
Cucsa.379890 Cucumis sativus Cucsa.379890 I 0.762
Bostr.23794s0343 Boechera stricta Bostr.23794s0343 I 0.762
cassava15802.m1 Manihot esculenta cassava15802.m1 I 0.762
ORGLA01G0304300 Oryza glaberrima ORGLA01G0304300 I 0.762
POPTR_1833s00200 Populus trichocarpa POPTR_1833s00200 I 0.762
Pavir.Ea03334 Panicum virgatum Pavir.Ea03334 I 0.762
Ciclev10013311m.g Citrus clementina Ciclev10013311m.g I 0.762
AC205250.3_FG004 Zea mays AC205250.3_FG004 I 0.762
AT5G04390 Arabidopsis thaliana AT5G04390 D 0.762
Lus10024428.g Linum usitatissimum Lus10024428.g I 0.762
ONIVA01G41600 Oryza nivara ONIVA01G41600 I 0.762
POPTR_0006s12340 Populus trichocarpa POPTR_0006s12340 I 0.762
Bra017188 Brassica rapa Bra017188 I 0.761
PGSC0003DMG400015534 Solanum tuberosum PGSC0003DMG400015534 I 0.761
PGSC0003DMG400015557 Solanum tuberosum PGSC0003DMG400015557 I 0.761
Bo4g186920 Brassica oleracea Bo4g186920 I 0.761
Bo4g030570 Brassica oleracea Bo4g030570 I 0.761
Bra005197 Brassica rapa Bra005197 I 0.761
AT5G03510 Arabidopsis thaliana AT5G03510 D 0.761
OPUNC03G12210 Oryza punctata OPUNC03G12210 I 0.761
GSMUA_AchrUn_randomG07580_001 Musa acuminata GSMUA_AchrUn_randomG07580_001 I 0.761
Carubv10024141m.g Capsella rubella Carubv10024141m.g I 0.761
28637.m000203 Ricinus communis 28637.m000203 I 0.761
ZAT11 Arabidopsis thaliana AT2G37430 I 0.761
Cagra.0666s0001 Capsella grandiflora Cagra.0666s0001 I 0.761
PGSC0003DMG400015532 Solanum tuberosum PGSC0003DMG400015532 I 0.761
PGSC0003DMG400015533 Solanum tuberosum PGSC0003DMG400015533 I 0.761
PGSC0003DMG400015531 Solanum tuberosum PGSC0003DMG400015531 I 0.761
cassava35212.m1 Manihot esculenta cassava35212.m1 I 0.761
Pavir.J32634 Panicum virgatum Pavir.J32634 I 0.760
TRAES3BF117500110CFD_g Triticum aestivum TRAES3BF117500110CFD_g I 0.760
OMERI05G16850 Oryza meridionalis OMERI05G16850 I 0.759
orange1.1g044181m.g Citrus sinensis orange1.1g044181m.g I 0.758
orange1.1g041414m.g Citrus sinensis orange1.1g041414m.g I 0.758
orange1.1g040287m.g Citrus sinensis orange1.1g040287m.g I 0.758
Traes_1AS_8F01029FE Triticum aestivum Traes_1AS_8F01029FE I 0.758
Traes_1BS_7B7D5282B Triticum aestivum Traes_1BS_7B7D5282B I 0.758
Traes_1DS_75AF80583 Triticum aestivum Traes_1DS_75AF80583 I 0.758
Traes_1DS_D1F453705 Triticum aestivum Traes_1DS_D1F453705 I 0.758
Traes_1BS_527ED00B9 Triticum aestivum Traes_1BS_527ED00B9 I 0.758
GSMUA_Achr5G29140_001 Musa acuminata GSMUA_Achr5G29140_001 I 0.758
GSMUA_Achr11G24480_001 Musa acuminata GSMUA_Achr11G24480_001 I 0.758
GSMUA_Achr5G28550_001 Musa acuminata GSMUA_Achr5G28550_001 I 0.758
cassava39064.m1 Manihot esculenta cassava39064.m1 I 0.758
TRIUR3_04728 Triticum urartu TRIUR3_04728 I 0.758
Ciclev10032899m.g Citrus clementina Ciclev10032899m.g I 0.758
Ciclev10032922m.g Citrus clementina Ciclev10032922m.g I 0.758
Aquca_010_00703 Aquilegia coerulea Aquca_010_00703 I 0.758
Ciclev10032889m.g Citrus clementina Ciclev10032889m.g I 0.758
Ca_07663 Cicer arietinum Ca_07663 I 0.757
MLOC_39001 Hordeum vulgare MLOC_39001 I 0.757
Eucgr.A01231 Eucalyptus grandis Eucgr.A01231 I 0.757
GSMUA_Achr1G01260_001 Musa acuminata GSMUA_Achr1G01260_001 I 0.757
Lus10023433.g Linum usitatissimum Lus10023433.g I 0.757
MTR_1g067660 Medicago truncatula MTR_1g067660 I 0.757
PRUPE_ppa012242mg Prunus persica PRUPE_ppa012242mg I 0.757
Lus10040312.g Linum usitatissimum Lus10040312.g I 0.757
GLYMA10G05180 Glycine max GLYMA10G05180 I 0.757
BRADI2G37430 Brachypodium distachyon BRADI2G37430 I 0.757
TRIUR3_11899 Triticum urartu TRIUR3_11899 I 0.757
Bra030981 Brassica rapa Bra030981 I 0.756
GRMZM2G061897 Zea mays GRMZM2G061897 I 0.756
GLYMA13G19550 Glycine max GLYMA13G19550 I 0.756
Pavir.Ib04509 Panicum virgatum Pavir.Ib04509 I 0.756
Cucsa.065930 Cucumis sativus Cucsa.065930 I 0.756
Cla018516 Citrullus lanatus Cla018516 I 0.756
Pavir.Ia00294 Panicum virgatum Pavir.Ia00294 I 0.756
PGSC0003DMG400039582 Solanum tuberosum PGSC0003DMG400039582 I 0.756