GRMZM2G455889 (Zea mays)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 GRMZM2G455889 T118628_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
DISCONTINUED: This record has been withdrawn by NCBI staff. This record represented a gene that is not currently annotated by NCBI.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AZF1
M01860_2.00
Arabidopsis thaliana
NWSYDNN

NNHRSWN
PBM
Weirauch et al.(2014)
pTH7163
0.762 0.696
AZF1
M06826_2.00
Arabidopsis thaliana
WCACTVWCWNH

DNWGWBAGTGW
Dap-seq
OMalley et al.(2016)
AZF1_colamp_a
0.762 0.696
ZAT6
M00861_2.00
Arabidopsis thaliana
NNHRSTN

NASYDNN
PBM
Franco-Zorrilla et al.(2014)
ZAT6
0.755 0.674
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G455889_P01 C2H2 ZF 378 400
GRMZM2G455889_P01 C2H2 ZF 424 446

Links

Other C2H2 ZF family TFs
Other Zea mays TFs

99 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ZAT6 Arabidopsis thaliana AT5G04340 D 0.755
AZF1 Arabidopsis thaliana AT5G67450 D 0.762
VIT_18s0001g09230 Vitis vinifera VIT_18s0001g09230 I 0.755
Cucsa.395710 Cucumis sativus Cucsa.395710 I 0.759
Bostr.15697s0099 Boechera stricta Bostr.15697s0099 I 0.757
Bostr.19424s0704 Boechera stricta Bostr.19424s0704 I 0.755
Bostr.2128s0015 Boechera stricta Bostr.2128s0015 I 0.755
Bostr.26675s0176 Boechera stricta Bostr.26675s0176 I 0.766
Bostr.3148s0159 Boechera stricta Bostr.3148s0159 I 0.755
Cagra.6943s0031 Capsella grandiflora Cagra.6943s0031 I 0.755
Carubv10014391m.g Capsella rubella Carubv10014391m.g I 0.755
Ciclev10002297m.g Citrus clementina Ciclev10002297m.g I 0.755
Cucsa.352740 Cucumis sativus Cucsa.352740 I 0.779
Cucsa.219210 Cucumis sativus Cucsa.219210 I 0.760
cassava43667.valid.m1 Manihot esculenta cassava43667.valid.m1 I 0.760
Ca_01586 Cicer arietinum Ca_01586 I 0.755
Ca_18364 Cicer arietinum Ca_18364 I 0.755
Cla022966 Citrullus lanatus Cla022966 I 0.759
Pm005390 Prunus mume Pm005390 I 0.755
Pm021284 Prunus mume Pm021284 I 0.755
28152.m000908 Ricinus communis 28152.m000908 I 0.760
cassava12475.valid.m1 Manihot esculenta cassava12475.valid.m1 I 0.761
cassava32957.m1 Manihot esculenta cassava32957.m1 I 0.761
cassava35732.valid.m1 Manihot esculenta cassava35732.valid.m1 I 0.755
Ciclev10029065m.g Citrus clementina Ciclev10029065m.g I 0.755
Eucgr.G01247 Eucalyptus grandis Eucgr.G01247 I 0.755
evm.TU.supercontig_6.32 Carica papaya evm.TU.supercontig_6.32 I 0.762
SapurV1A.0845s0100 Salix purpurea SapurV1A.0845s0100 I 0.755
Thhalv10001538m.g Eutrema salsugineum Thhalv10001538m.g I 0.766
Thhalv10010909m.g Eutrema salsugineum Thhalv10010909m.g I 0.767
Thhalv10014546m.g Eutrema salsugineum Thhalv10014546m.g I 0.755
Thhalv10021307m.g Eutrema salsugineum Thhalv10021307m.g I 0.755
PK10188.1 Cannabis sativa PK10188.1 I 0.755
chr1.CM0050.50.nc Lotus japonicus chr1.CM0050.50.nc I 0.779
chr1.LjT45O14.140.nd Lotus japonicus chr1.LjT45O14.140.nd I 0.779
chr5.CM0096.480.nc Lotus japonicus chr5.CM0096.480.nc I 0.755
orange1.1g038669m.g Citrus sinensis orange1.1g038669m.g I 0.755
orange1.1g024499m.g Citrus sinensis orange1.1g024499m.g I 0.755
MDP0000762756 Malus domestica MDP0000762756 I 0.755
gene02558-v1.0-hybrid Fragaria vesca gene02558-v1.0-hybrid I 0.755
Gorai.002G132600 Gossypium raimondii Gorai.002G132600 I 0.765
Gorai.005G232300 Gossypium raimondii Gorai.005G232300 I 0.755
Gorai.008G020700 Gossypium raimondii Gorai.008G020700 I 0.755
Gorai.010G025200 Gossypium raimondii Gorai.010G025200 I 0.765
Gorai.013G050100 Gossypium raimondii Gorai.013G050100 I 0.755
MDP0000198015 Malus domestica MDP0000198015 I 0.755
MDP0000319225 Malus domestica MDP0000319225 I 0.755
MDP0000573176 Malus domestica MDP0000573176 I 0.755
chr5.CM0200.550.nc Lotus japonicus chr5.CM0200.550.nc I 0.755
VIT_07s0129g00240 Vitis vinifera VIT_07s0129g00240 I 0.757
AC211702.2_FG002 Zea mays AC211702.2_FG002 I 0.806
Bra009464 Brassica rapa Bra009464 I 0.755
Bra012914 Brassica rapa Bra012914 I 0.767
Bra018817 Brassica rapa Bra018817 I 0.760
Bra022436 Brassica rapa Bra022436 I 0.755
Bra029985 Brassica rapa Bra029985 I 0.767
Bra031834 Brassica rapa Bra031834 I 0.762
Bra037845 Brassica rapa Bra037845 I 0.762
Bra038219 Brassica rapa Bra038219 I 0.755
Bra040325 Brassica rapa Bra040325 I 0.766
Bra000372 Brassica rapa Bra000372 I 0.766
Bo9g181170 Brassica oleracea Bo9g181170 I 0.755
AMTR_s00137p00104280 Amborella trichopoda AMTR_s00137p00104280 I 0.776
Bo1g081350 Brassica oleracea Bo1g081350 I 0.767
Bo1g113530 Brassica oleracea Bo1g113530 I 0.755
Bo2g168030 Brassica oleracea Bo2g168030 I 0.762
Bo3g037560 Brassica oleracea Bo3g037560 I 0.766
Bo4g195370 Brassica oleracea Bo4g195370 I 0.766
Bo5g113850 Brassica oleracea Bo5g113850 I 0.755
Bo7g048650 Brassica oleracea Bo7g048650 I 0.757
Bo9g019120 Brassica oleracea Bo9g019120 I 0.762
AZF2 Arabidopsis lyrata fgenesh2_kg.3__2173__AT3G19580.2 I 0.755
GLYMA04G04760 Glycine max GLYMA04G04760 I 0.755
GLYMA06G04840 Glycine max GLYMA06G04840 I 0.755
PGSC0003DMG400045547 Solanum tuberosum PGSC0003DMG400045547 I 0.760
POPTR_0002s12010 Populus trichocarpa POPTR_0002s12010 I 0.756
POPTR_0014s01760 Populus trichocarpa POPTR_0014s01760 I 0.755
PRUPE_ppa009924mg Prunus persica PRUPE_ppa009924mg I 0.755
PRUPE_ppa011060mg Prunus persica PRUPE_ppa011060mg I 0.755
C2H2 Arabidopsis lyrata scaffold_600374.1 I 0.755
Solyc12g088390.1 Solanum lycopersicum Solyc12g088390.1 I 0.762
TCM_007214 Theobroma cacao TCM_007214 I 0.755
TCM_034720 Theobroma cacao TCM_034720 I 0.755
PGSC0003DMG400041467 Solanum tuberosum PGSC0003DMG400041467 I 0.760
PGSC0003DMG400034322 Solanum tuberosum PGSC0003DMG400034322 I 0.759
GLYMA14G09760 Glycine max GLYMA14G09760 I 0.755
GLYMA17G35430 Glycine max GLYMA17G35430 I 0.755
GSMUA_Achr2G13410_001 Musa acuminata GSMUA_Achr2G13410_001 I 0.801
MTR_1g018420 Medicago truncatula MTR_1g018420 I 0.756
MTR_1g106730 Medicago truncatula MTR_1g106730 I 0.755
MTR_3g102980 Medicago truncatula MTR_3g102980 I 0.755
OB03G42170 Oryza brachyantha OB03G42170 I 0.765
PGSC0003DMG400011548 Solanum tuberosum PGSC0003DMG400011548 I 0.765
Bra029315 Brassica rapa Bra029315 N 0.758
Sb02g038000 Sorghum bicolor Sb02g038000 N 0.761
Pavir.J16973 Panicum virgatum Pavir.J16973 N 0.761
Bo2g161550 Brassica oleracea Bo2g161550 N 0.758
Pavir.J15304 Panicum virgatum Pavir.J15304 N 0.761
Traes_2BS_DD07C2EE6 Triticum aestivum Traes_2BS_DD07C2EE6 N 0.761