LotgiG126809 (Lottia gigantea)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 LotgiG126809 T121637_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SP4
M02879_2.00
Homo sapiens
NWRGCCACGCCCMCHYN

NRDGKGGGCGTGGCYWN
SELEX
Jolma et al.(2013)
SP4_1
0.807 0.928
SP4
M08296_2.00
Homo sapiens
NNVGCYCCKCCYMYH

DRKRGGMGGRGCBNN
ChIP-seq
Schmitges et al.(2016)
Q02446.MEME
0.807 0.928
SP4
M08873_2.00
Homo sapiens
BYHDKCYCCGCCYYYHBSBB

VVSVDRRRGGCGGRGMHDRV
Misc
Kulakovskiy et al.(2013)
SP4_HUMAN.H11MO.0.A
0.807 0.928
SP4
M10165_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SP4_Q3
0.807 0.928
SP4
M10166_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SP4_Q5
0.807 0.928
Spps
M06159_2.00
Drosophila melanogaster
KWDRCCMCGCCCMBH

DVKGGGCGKGGYHWM
B1H
Zhu et al.(2011)
CG5669_SANGER_10_FBgn0039169
0.800 0.884
Spps
M06160_2.00
Drosophila melanogaster
BDDGCCMCGCCCMYN

NRKGGGCGKGGCHHV
B1H
Zhu et al.(2011)
CG5669_SOLEXA_5_FBgn0039169
0.800 0.884
Sp4
M01862_2.00
Mus musculus
NMCGCCCMY

RKGGGCGKN
PBM
Weirauch et al.(2014)
pTH4998
0.791 0.913
Sp4
M00133_2.00
Mus musculus
HMCGCCCMYN

NRKGGGCGKD
PBM
Badis et al.(2009)
Sp4_1011
0.791 0.913
Sp4
M05859_2.00
Mus musculus
DGNYMCGCCCHNN

NNDGGGCGKRNCH
SMiLE-seq
Isakova et al.(2017)
SP4
0.791 0.913
Sp4
M08975_2.00
Mus musculus
BYHDKCYCCGCCYYYHBSBB

VVSVDRRRGGCGGRGMHDRV
Misc
Kulakovskiy et al.(2013)
SP4_MOUSE.H11MO.0.B
0.791 0.913
SP3
M02910_2.00
Homo sapiens
VCCMCRCCCMY

RKGGGYGKGGB
SELEX
Jolma et al.(2013)
SP3_1
0.790 0.913
SP3
M04558_2.00
Homo sapiens
NRCCACGCCCMYH

DRKGGGCGTGGYN
SELEX
Yin et al.(2017)
SP3_eDBD_HT-SELEX
0.790 0.913
SP3
M08920_2.00
Homo sapiens
NBBNVSCCCCKCCCMBBBNN

NNVVVKGGGMGGGGSBNVVN
Misc
Kulakovskiy et al.(2013)
SP3_HUMAN.H11MO.0.B
0.790 0.913
SP3
M10263_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SP3_Q3_01
0.790 0.913
SP3
M10264_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SP3_Q3
0.790 0.913
SP3
M04559_2.00
Homo sapiens
NRCCMCGCCCMCH

DGKGGGCGKGGYN
SELEX
Yin et al.(2017)
SP3_eDBD_Methyl-HT-SELEX
0.790 0.913
Sp1
M00765_2.00
Mus musculus
NMCGCCCMY

RKGGGCGKN
PBM
Weirauch et al.(2013)
pTH0978
0.787 0.913
Sp1
M08963_2.00
Mus musculus
CCCBKCYCCKCCCCCNBCYCSBSC

GSVSGRGVNGGGGGMGGRGMVGGG
Misc
Kulakovskiy et al.(2013)
SP1_MOUSE.H11MO.0.A
0.787 0.913
SP1
M02921_2.00
Homo sapiens
RCCMCDCCCMH

DKGGGHGKGGY
SELEX
Jolma et al.(2013)
SP1_1
0.784 0.899
SP1
M04605_2.00
Homo sapiens
NWRRCCACGCCCMCH

DGKGGGCGTGGYYWN
SELEX
Yin et al.(2017)
SP1_eDBD_HT-SELEX
0.784 0.899
SP1
M08096_2.00
Homo sapiens
BYCCCKCCCCY

RGGGGMGGGRV
ChIP-seq
Mathelier et al.(2014)
MA0079.3
0.784 0.899
SP1
M08363_2.00
Homo sapiens
CCCHNBCYCCDCCCY

RGGGHGGRGVNDGGG
ChIP-seq
Schmitges et al.(2016)
P08047.MEME
0.784 0.899
SP1
M08938_2.00
Homo sapiens
BCSSSBCCHVGCCCCGCCCCYN

NRGGGGCGGGGCBDGGVSSSGV
Misc
Kulakovskiy et al.(2013)
SP1_HUMAN.H11MO.0.A
0.784 0.899
SP1
M10294_2.00
Homo sapiens
DSCMHGCCYH

DRGGCDKGSH
Transfac
Matys et al.(2006)
V$SP1_01
0.784 0.899
SP1
M10295_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SP1_02
0.784 0.899
SP1
M10296_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SP1_07
0.784 0.899
SP1
M10297_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SP1_08
0.784 0.899
SP1
M10298_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SP1_Q2_02
0.784 0.899
SP1
M10299_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SP1_Q3
0.784 0.899
SP1
M10300_2.00
Homo sapiens
VVCCCCGCCCMBN

NVKGGGCGGGGBB
Transfac
Matys et al.(2006)
V$SP1_Q6
0.784 0.899
SP1
M04606_2.00
Homo sapiens
NWRGCCMCGCCCMYH

DRKGGGCGKGGCYWN
SELEX
Yin et al.(2017)
SP1_eDBD_Methyl-HT-SELEX
0.784 0.899
Sp3
M08978_2.00
Mus musculus
NBBNVSCCCCKCCCMBBBNN

NNVVVKGGGMGGGGSBNVVN
Misc
Kulakovskiy et al.(2013)
SP3_MOUSE.H11MO.0.B
0.778 0.913
SP9
M04645_2.00
Homo sapiens
VMCMCGCCCMYH

DRKGGGCGKGKB
SELEX
Yin et al.(2017)
SP9_eDBD_HT-SELEX
0.778 0.899
SP9
M04646_2.00
Homo sapiens
RYCACGCCCMYH

DRKGGGCGTGRY
SELEX
Yin et al.(2017)
SP9_eDBD_Methyl-HT-SELEX
0.778 0.899
SP8
M02898_2.00
Homo sapiens
VMCACBCCCMCH

DGKGGGVGTGKB
SELEX
Jolma et al.(2013)
SP8_1
0.778 0.884
SP8
M04517_2.00
Homo sapiens
NMCMCGCCCMYH

DRKGGGCGKGKN
SELEX
Yin et al.(2017)
SP8_eDBD_HT-SELEX
0.778 0.884
SP8
M04518_2.00
Homo sapiens
RHCACGCCCMYH

DRKGGGCGTGDY
SELEX
Yin et al.(2017)
SP8_eDBD_Methyl-HT-SELEX
0.778 0.884
Sp1
M03682_2.00
Drosophila melanogaster
HNGCCACGCCCARK

MYTGGGCGTGGCND
SELEX
Nitta et al.(2015)
Sp1_1
0.765 0.870
Sp1
M06117_2.00
Drosophila melanogaster
DHYMCGCCCMY

RKGGGCGKRDH
B1H
Zhu et al.(2011)
Sp1_SANGER_5_FBgn0020378
0.765 0.870
Sp1
M06118_2.00
Drosophila melanogaster
NKHHMCGCCCMYNN

NNRKGGGCGKDDMN
B1H
Zhu et al.(2011)
Sp1_SOLEXA_2.5_FBgn0020378
0.765 0.870
Sp5
M09016_2.00
Mus musculus
CYCCKCCYHYHBCYYHBYYYHYHB

VDRDRRRVDRRGVDRDRGGMGGRG
Misc
Kulakovskiy et al.(2013)
SP5_MOUSE.H11MO.0.C
0.765 0.855
SP5
M10319_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SP5_Q2
0.765 0.855
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LotgiP126809 C2H2 ZF 5 29
LotgiP126809 C2H2 ZF 35 59
LotgiP126809 C2H2 ZF 65 87

Links

Other C2H2 ZF family TFs
Other Lottia gigantea TFs

530 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29872.m000548 Ricinus communis 29872.m000548 N 0.000
Aquca_001_00551 Aquilegia coerulea Aquca_001_00551 N 0.000
Aquca_020_00179 Aquilegia coerulea Aquca_020_00179 N 0.000
cassava1476.valid.m1 Manihot esculenta cassava1476.valid.m1 N 0.000
Ciclev10025757m.g Citrus clementina Ciclev10025757m.g N 0.000
Cla015679 Citrullus lanatus Cla015679 N 0.000
Cucsa.358990 Cucumis sativus Cucsa.358990 N 0.000
Eucgr.J02994 Eucalyptus grandis Eucgr.J02994 N 0.000
evm.TU.supercontig_181.13 Carica papaya evm.TU.supercontig_181.13 N 0.000
gene05956-v1.0-hybrid Fragaria vesca gene05956-v1.0-hybrid N 0.000
GLYMA15G01730 Glycine max GLYMA15G01730 N 0.000
Gorai.006G098600 Gossypium raimondii Gorai.006G098600 N 0.000
Gorai.010G228000 Gossypium raimondii Gorai.010G228000 N 0.000
Gorai.011G076900 Gossypium raimondii Gorai.011G076900 N 0.000
MDP0000276691 Malus domestica MDP0000276691 N 0.000
MDP0000500940 Malus domestica MDP0000500940 N 0.000
mgf024433m Mimulus guttatus mgf024433m N 0.000
MTR_2g102227 Medicago truncatula MTR_2g102227 N 0.000
orange1.1g048259m.g Citrus sinensis orange1.1g048259m.g N 0.000
PGSC0003DMG400027438 Solanum tuberosum PGSC0003DMG400027438 N 0.000
PGSC0003DMG400031382 Solanum tuberosum PGSC0003DMG400031382 N 0.000
PK03816.1 Cannabis sativa PK03816.1 N 0.000
Pm013502 Prunus mume Pm013502 N 0.000
POPTR_0001s18000 Populus trichocarpa POPTR_0001s18000 N 0.000
PRUPE_ppa009556mg Prunus persica PRUPE_ppa009556mg N 0.000
SapurV1A.1168s0060 Salix purpurea SapurV1A.1168s0060 N 0.000
SapurV1A.3798s0010 Salix purpurea SapurV1A.3798s0010 N 0.000
Solyc05g018350.2 Solanum lycopersicum Solyc05g018350.2 N 0.000
Solyc12g043090.1 Solanum lycopersicum Solyc12g043090.1 N 0.000
VIT_11s0016g04130 Vitis vinifera VIT_11s0016g04130 N 0.000