LotgiG139415 (Lottia gigantea)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 LotgiG139415 T121672_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
BCL11B
M04453_2.00
Homo sapiens
GTGAACGBNDNNVCTACAC

GTGTAGBNNHNVCGTTCAC
SELEX
Yin et al.(2017)
BCL11B_eDBD_HT-SELEX
0.777 0.850
BCL11B
M04454_2.00
Homo sapiens
GTGAACGBNDNHVCTACAC

GTGTAGBDNHNVCGTTCAC
SELEX
Yin et al.(2017)
BCL11B_eDBD_Methyl-HT-SELEX
0.777 0.850
BCL11A
M07926_2.00
Homo sapiens
BTYTCASTTCCYYHH

DDRRGGAASTGARAV
ChIP-seq
Gerstein et al.(2012)
GM12878_BCL11A_HudsonAlpha
0.760 0.841
BCL11A
M08881_2.00
Homo sapiens
BHBYCABTTCCYBHNYN

NRNDVRGGAAVTGRVDV
Misc
Kulakovskiy et al.(2013)
BC11A_HUMAN.H11MO.0.A
0.760 0.841
BCL11A
M10187_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BCL11A_02
0.760 0.841
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LotgiP139415 C2H2 ZF 76 97
LotgiP139415 C2H2 ZF 103 125
LotgiP139415 C2H2 ZF 204 226
LotgiP139415 C2H2 ZF 232 254
LotgiP139415 C2H2 ZF 262 283

Links

Other C2H2 ZF family TFs
Other Lottia gigantea TFs

122 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30055.m001548 Ricinus communis 30055.m001548 I 0.000
AMTR_s00114p00031980 Amborella trichopoda AMTR_s00114p00031980 I 0.000
Bostr.12302s0127 Boechera stricta Bostr.12302s0127 I 0.000
cassava16074.m1 Manihot esculenta cassava16074.m1 I 0.000
cassava17300.m1 Manihot esculenta cassava17300.m1 I 0.000
Ciclev10028635m.g Citrus clementina Ciclev10028635m.g I 0.000
Cucsa.385090 Cucumis sativus Cucsa.385090 I 0.000
Gorai.003G007000 Gossypium raimondii Gorai.003G007000 N 0.000
orange1.1g037676m.g Citrus sinensis orange1.1g037676m.g I 0.000
Pm001315 Prunus mume Pm001315 I 0.000
POPTR_0009s16610 Populus trichocarpa POPTR_0009s16610 I 0.000
SapurV1A.0016s1330 Salix purpurea SapurV1A.0016s1330 I 0.000
SapurV1A.0025s0010 Salix purpurea SapurV1A.0025s0010 I 0.000
SapurV1A.0374s0070 Salix purpurea SapurV1A.0374s0070 I 0.000
SELMODRAFT_177659 Selaginella moellendorffii SELMODRAFT_177659 I 0.000
SELMODRAFT_266892 Selaginella moellendorffii SELMODRAFT_266892 I 0.000
SELMODRAFT_428822 Selaginella moellendorffii SELMODRAFT_428822 I 0.000
SELMODRAFT_443424 Selaginella moellendorffii SELMODRAFT_443424 I 0.000
DPBF2 Vitis vinifera VIT_06s0080g00340 I 0.000