LotgiG64240 (Lottia gigantea)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 LotgiG64240 T121805_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
YY1
M08237_2.00
Homo sapiens
VNVGCVGCCATBTTD

HAAVATGGCBGCBNB
ChIP-seq
Najafabadi et al.(2015b)
YY1
0.815 0.978
YY1
M02877_2.00
Homo sapiens
NVSRCCATNDH

DHNATGGYSBN
SELEX
Jolma et al.(2013)
YY1_1
0.815 0.967
YY1
M04406_2.00
Homo sapiens
NDCCATYTTKRRBNDWNHGTGCK

MGCACDNWHNVYYMAARATGGHN
SELEX
Yin et al.(2017)
YY1_FL_HT-SELEX_1
0.815 0.967
YY1
M04407_2.00
Homo sapiens
NKMCGCCATYTTGN

NCAARATGGCGKMN
SELEX
Yin et al.(2017)
YY1_FL_HT-SELEX_2
0.815 0.967
YY1
M05845_2.00
Homo sapiens
NNNVGCCATNWYD

HRWNATGGCBNNN
SMiLE-seq
Isakova et al.(2017)
YY1
0.815 0.967
YY1
M08288_2.00
Homo sapiens
GCCGCCATBKYB

VRMVATGGCGGC
ChIP-seq
Schmitges et al.(2016)
P25490_1-4.RCADE
0.815 0.967
YY1
M08085_2.00
Homo sapiens
KCVGCCATBTTK

MAAVATGGCBGM
ChIP-seq
Mathelier et al.(2014)
MA0095.2
0.815 0.967
YY1
M07855_2.00
Homo sapiens
VNVGCCGCCATBTTK

MAAVATGGCGGCBNB
ChIP-seq
Gerstein et al.(2012)
GM12878_YY1_HudsonAlpha
0.815 0.967
YY1
M07856_2.00
Homo sapiens
GCSGCCATBTT

AAVATGGCSGC
ChIP-seq
Gerstein et al.(2012)
GM12891_YY1_HudsonAlpha
0.815 0.967
YY1
M07857_2.00
Homo sapiens
BSNVGCSGCCATBTT

AAVATGGCSGCBNSV
ChIP-seq
Gerstein et al.(2012)
GM12892_YY1_HudsonAlpha
0.815 0.967
YY1
M07858_2.00
Homo sapiens
NNVGCSGCCATBTTK

MAAVATGGCSGCBNN
ChIP-seq
Gerstein et al.(2012)
H1-hESC_YY1_HudsonAlpha
0.815 0.967
YY1
M07859_2.00
Homo sapiens
SBSGCSGCCATBTTK

MAAVATGGCSGCSVS
ChIP-seq
Gerstein et al.(2012)
K562b_YY1_UCD
0.815 0.967
YY1
M07860_2.00
Homo sapiens
GCCGCCATBTTKNNN

NNNMAAVATGGCGGC
ChIP-seq
Gerstein et al.(2012)
K562_YY1_HudsonAlpha
0.815 0.967
YY1
M07861_2.00
Homo sapiens
VGCSGCCATBTTK

MAAVATGGCSGCB
ChIP-seq
Gerstein et al.(2012)
NT2-D1_YY1_UCD
0.815 0.967
YY1
M08865_2.00
Homo sapiens
GCCGCCATYTTK

MAARATGGCGGC
Misc
Kulakovskiy et al.(2013)
TYY1_HUMAN.H11MO.0.A
0.815 0.967
Yy1
M08971_2.00
Mus musculus
GCCGCCATBTTB

VAAVATGGCGGC
Misc
Kulakovskiy et al.(2013)
TYY1_MOUSE.H11MO.0.A
0.815 0.967
YY1
M10138_2.00
Homo sapiens
NVNNDCCATNTWNNVWN

NWBNNWANATGGHNNBN
Transfac
Matys et al.(2006)
V$YY1_01
0.815 0.967
YY1
M10139_2.00
Homo sapiens
NNNSBGCCATCTDSNHTSND

HNSADNSHAGATGGCVSNNN
Transfac
Matys et al.(2006)
V$YY1_02
0.815 0.967
YY1
M10140_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YY1_03
0.815 0.967
YY1
M10141_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YY1_07
0.815 0.967
YY1
M10142_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YY1_08
0.815 0.967
YY1
M10143_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YY1_Q4_01
0.815 0.967
YY1
M10144_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YY1_Q6_02
0.815 0.967
YY1
M10145_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YY1_Q6_03
0.815 0.967
YY1
M10146_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YY1_Q6
0.815 0.967
YY1
M04408_2.00
Homo sapiens
NDCCATYTTKRRCDDWWHGTGCY

RGCACDWWHHGYYMAARATGGHN
SELEX
Yin et al.(2017)
YY1_FL_Methyl-HT-SELEX_1
0.815 0.967
YY1
M04409_2.00
Homo sapiens
RKCSGCCATYTTGD

HCAARATGGCSGMY
SELEX
Yin et al.(2017)
YY1_FL_Methyl-HT-SELEX_2
0.815 0.967
TYY2_RAT
M10385_2.00
Rattus norvegicus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YY2
0.804 0.891
pho
M06053_2.00
Drosophila melanogaster
KNVGCCATDAHNSY

RSNDTHATGGCBNM
B1H
Zhu et al.(2011)
pho_FlyReg_FBgn0002521
0.797 0.935
pho
M06054_2.00
Drosophila melanogaster
KCCGCCATHWTK

MAWDATGGCGGM
B1H
Zhu et al.(2011)
pho_SANGER_10_FBgn0002521
0.797 0.935
pho
M06055_2.00
Drosophila melanogaster
NKBCGCCATHWTKNN

NNMAWDATGGCGVMN
B1H
Zhu et al.(2011)
pho_SOLEXA_5_FBgn0002521
0.797 0.935
phol
M06144_2.00
Drosophila melanogaster
CGCCATHTTK

MAADATGGCG
B1H
Zhu et al.(2011)
phol_SANGER_5_FBgn0035997
0.767 0.837
phol
M06145_2.00
Drosophila melanogaster
NKNCGCCATNTTKNN

NNMAANATGGCGNMN
B1H
Zhu et al.(2011)
phol_SOLEXA_5_FBgn0035997
0.767 0.837
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LotgiP64240 C2H2 ZF 209 233
LotgiP64240 C2H2 ZF 238 260
LotgiP64240 C2H2 ZF 266 290
LotgiP64240 C2H2 ZF 296 320

Links

Other C2H2 ZF family TFs
Other Lottia gigantea TFs

Invalid Input OrderBy

164 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action