LotgiG83709 (Lottia gigantea)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 LotgiG83709 T121852_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
sens-2
M06165_2.00 		Drosophila melanogaster
RYAAATCWSDGCAYNC
GNRTGCHSWGATTTRY		 B1H
Zhu et al.(2011)
sens-2_SANGER_2.5_FBgn0051632 		0.787 0.855
Gfi1b
M08098_2.00 		Mus musculus
MAATCWCWGCH
DGCWGWGATTK		 ChIP-seq
Mathelier et al.(2014)
MA0483.1 		0.775 0.826
Gfi1b
M08977_2.00 		Mus musculus
MAAYCACWGH
DCWGWGRTTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_MOUSE.H11MO.0.A 		0.775 0.826
Gfi1b
M09514_2.00 		Mus musculus
MAATCWSWGC
GCWSWGATTK		 Misc
Heinz et al.(2010)
HPC7-Gfi1b_GSE22178 		0.775 0.826
GFI1B
M00240_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_REF 		0.773 0.819
GFI1B
M04523_2.00 		Homo sapiens
NMAATCASDGCNNBBCACTNN
NNAGTGVVNNGCHSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_HT-SELEX 		0.773 0.819
GFI1B
M08909_2.00 		Homo sapiens
MAATCWSDGY
RCHSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_HUMAN.H11MO.0.A 		0.773 0.819
GFI1B
M10243_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_01 		0.773 0.819
GFI1B
M10244_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_Q6 		0.773 0.819
GFI1B
M00239_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_A204T 		0.773 0.819
GFI1B
M04524_2.00 		Homo sapiens
NMAATCASWGCDNNBCACTHN
NDAGTGVNNHGCWSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_Methyl-HT-SELEX 		0.773 0.819
GFI1
M00238_2.00 		Homo sapiens
NWAWMNNNN
NNNNKWTWN		 PBM
Barrera et al.(2016)
GFI1_REF 		0.767 0.819
GFI1
M04507_2.00 		Homo sapiens
BMAATCACDGCNHBBCACTMN
NKAGTGVVDNGCHGTGATTKV		 SELEX
Yin et al.(2017)
GFI1_eDBD_HT-SELEX 		0.767 0.819
Gfi1
M02668_2.00 		Rattus norvegicus
NMAATCWVHS
SDBWGATTKN		 SELEX
Mathelier et al.(2014)
MA0038.1 		0.767 0.819
GFI1
M08905_2.00 		Homo sapiens
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_HUMAN.H11MO.0.C 		0.767 0.819
Gfi1
M08984_2.00 		Mus musculus
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_MOUSE.H11MO.0.C 		0.767 0.819
GFI1
M10235_2.00 		Homo sapiens
NNNNNNNRCHSWGATTTDNNBNNN
NNNVNNHAAATCWSDGYNNNNNNN		 Transfac
Matys et al.(2006)
V$GFI1_01 		0.767 0.819
GFI1
M10236_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1_Q6_01 		0.767 0.819
GFI1
M04508_2.00 		Homo sapiens
NNAGTGVVNHGCWSTGATTKV
BMAATCASWGCDNBBCACTNN		 SELEX
Yin et al.(2017)
GFI1_eDBD_Methyl-HT-SELEX 		0.767 0.819
GFI1
M00236_2.00 		Homo sapiens
NAATMNNNN
NNNNKATTN		 PBM
Barrera et al.(2016)
GFI1_L400F 		0.765 0.812
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LotgiP83709 C2H2 ZF 2 25
LotgiP83709 C2H2 ZF 31 53
LotgiP83709 C2H2 ZF 59 81
LotgiP83709 C2H2 ZF 87 109
LotgiP83709 C2H2 ZF 115 137
LotgiP83709 C2H2 ZF 143 166

Links

Other C2H2 ZF family TFs
Other Lottia gigantea TFs

126 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CGI_10017941 Crassostrea gigas CGI_10017941 I 0.805
Sakowv30015313m.g Saccoglossus kowalevskii Sakowv30015313m.g I 0.800
GA16348 Drosophila pseudoobscura FBgn0076363 I 0.787
GM16223 Drosophila sechellia FBgn0171139 I 0.787
GL26188 Drosophila persimilis FBgn0163770 I 0.787
GF15430 Drosophila ananassae FBgn0092455 I 0.787
GI23984 Drosophila mojavensis FBgn0146708 I 0.787
GG10437 Drosophila erecta FBgn0102746 I 0.787
GE14143 Drosophila yakuba FBgn0231766 I 0.787
GH13715 Drosophila grimshawi FBgn0121191 I 0.787
sens-2 Drosophila melanogaster FBgn0051632 D 0.787
GK24242 Drosophila willistoni FBgn0226203 I 0.787
GJ21268 Drosophila virilis FBgn0208401 I 0.787
MDOA011065 Musca domestica MDOA011065 I 0.787
GFI1B Macaca mulatta ENSMMUG00000005948 I 0.785
GFI1B Bos taurus ENSBTAG00000012772 I 0.782
ENSBTAP00000016974-D1 Bos grunniens ENSBTAP00000016974-D1 I 0.782
Sakowv30015302m.g Saccoglossus kowalevskii Sakowv30015302m.g I 0.780
Cmyd_10017172 Chelonia mydas Cmyd_10017172 I 0.780
tetur16g01570 Tetranychus urticae tetur16g01570 I 0.779
ENSSTOG00000022285 Ictidomys tridecemlineatus ENSSTOG00000022285 I 0.778
LotgiG129344 Lottia gigantea LotgiG129344 I 0.777
ENSPSIG00000012112 Pelodiscus sinensis ENSPSIG00000012112 I 0.777
Tal_R001363 Tyto alba Tal_R001363 I 0.777
SPU_012645 Strongylocentrotus purpuratus SPU_012645 I 0.777
CGI_10011355 Crassostrea gigas CGI_10011355 I 0.777
GFI1B Gallus gallus ENSGALG00000003478 I 0.775
GFI1B Meleagris gallopavo ENSMGAG00000006129 I 0.775
Aan_R008865 Calypte anna Aan_R008865 I 0.775
Gfi1b Dipodomys ordii ENSDORG00000000342 I 0.775
Gfo_R007994 Geospiza fortis Gfo_R007994 I 0.775
ENSPANG00000024216 Papio anubis ENSPANG00000024216 I 0.775
ENSAPLG00000003373 Anas platyrhynchos ENSAPLG00000003373 I 0.775
ENSCSAG00000015008 Chlorocebus sabaeus ENSCSAG00000015008 I 0.775
ENSP00000361195 Macaca fascicularis ENSP00000361195 I 0.775
Afo_R001655 Aptenodytes forsteri Afo_R001655 I 0.775
ENSFALG00000001479 Ficedula albicollis ENSFALG00000001479 I 0.775
Gfi1b Mus musculus ENSMUSG00000026815 D 0.775
GFI1B Pan troglodytes ENSPTRG00000021505 I 0.773
ENSMPUG00000012489 Mustela putorius furo ENSMPUG00000012489 I 0.773
ENSPPYG00000019718 Pongo abelii ENSPPYG00000019718 I 0.773
Gfi1b Rattus norvegicus ENSRNOG00000011353 I 0.773
GFI1B Oryctolagus cuniculus ENSOCUG00000001793 I 0.773
ENSNLEG00000012963 Nomascus leucogenys ENSNLEG00000012963 I 0.773
GFI1B Gorilla gorilla ENSGGOG00000015828 I 0.773
GFI1B Equus caballus ENSECAG00000008127 I 0.773
GFI1B Callithrix jacchus ENSCJAG00000018071 I 0.773
GFI1B Canis familiaris ENSCAFG00000019877 I 0.773
GFI1B Homo sapiens ENSG00000165702 D 0.773
GFI1B Dasypus novemcinctus ENSDNOG00000036528 I 0.773
GFI1B Myotis lucifugus ENSMLUG00000006673 I 0.772
gfi1ab Tetraodon nigroviridis ENSTNIG00000000651 I 0.772
CapteG45287 Capitella teleta CapteG45287 I 0.772
GFI1B Sus scrofa ENSSSCG00000005737 I 0.771
GFI1B Felis catus ENSFCAG00000027147 I 0.771
GFI1B Otolemur garnettii ENSOGAG00000008879 I 0.771
GFI1 Taeniopygia guttata ENSTGUG00000006060 I 0.770
GFI1 Meleagris gallopavo ENSMGAG00000008187 I 0.770
ENSAPLG00000015700 Anas platyrhynchos ENSAPLG00000015700 I 0.770
Tal_R006464 Tyto alba Tal_R006464 I 0.770
ENSPFOG00000023214 Poecilia formosa ENSPFOG00000023214 I 0.770
ENSLACG00000012207 Latimeria chalumnae ENSLACG00000012207 I 0.770
Gfo_R010648 Geospiza fortis Gfo_R010648 I 0.770
Afo_R006147 Aptenodytes forsteri Afo_R006147 I 0.770
ENSGALG00000005940 Gallus gallus ENSGALG00000005940 I 0.770
Aan_R000889 Calypte anna Aan_R000889 I 0.770
Alligator_sinensis_CCG007476.1 Alligator sinensis Alligator_sinensis_CCG007476.1 I 0.770
ENSGMOG00000007737 Gadus morhua ENSGMOG00000007737 I 0.770
GFI1B Monodelphis domestica ENSMODG00000012600 I 0.770
Brh_R002465 Buceros rhinoceros Brh_R002465 I 0.770
Ogr09401 Ophisaurus gracilis Ogr09401 I 0.769
gfi1ab Takifugu rubripes ENSTRUG00000000415 I 0.769
ENSONIG00000019246 Oreochromis niloticus ENSONIG00000019246 I 0.769
ENSAMXG00000004835 Astyanax mexicanus ENSAMXG00000004835 I 0.769
GFI1 Anolis carolinensis ENSACAG00000004498 I 0.769
gfi1ab Danio rerio ENSDARG00000044457 I 0.769
e_gw.11.853.1 Branchiostoma floridae e_gw.11.853.1 I 0.768
ENSPSIG00000008734 Pelodiscus sinensis ENSPSIG00000008734 I 0.767
GFI1 Callithrix jacchus ENSCJAG00000017609 I 0.767
ENSLACG00000013362 Latimeria chalumnae ENSLACG00000013362 I 0.767
ENSLOCG00000004711 Lepisosteus oculatus ENSLOCG00000004711 I 0.767
ENSMMUG00000005068 Macaca mulatta ENSMMUG00000005068 I 0.767
GFI1 Myotis lucifugus ENSMLUG00000015191 I 0.767
GFI1 Loxodonta africana ENSLAFG00000018346 I 0.767
GFI1 Gorilla gorilla ENSGGOG00000005320 I 0.767
GFI1 Equus caballus ENSECAG00000006647 I 0.767
GFI1 Dasypus novemcinctus ENSDNOG00000000782 I 0.767
GFI1 Erinaceus europaeus ENSEEUG00000000198 I 0.767
GFI1 Felis catus ENSFCAG00000005914 I 0.767
gfi1ab Gasterosteus aculeatus ENSGACG00000004257 I 0.767
GFI1 Homo sapiens ENSG00000162676 D 0.767
GFI1 Monodelphis domestica ENSMODG00000011802 I 0.767
ENSMPUG00000004178 Mustela putorius furo ENSMPUG00000004178 I 0.767
ENSSTOG00000014583 Ictidomys tridecemlineatus ENSSTOG00000014583 I 0.767
ENSPANG00000016433 Papio anubis ENSPANG00000016433 I 0.767
ENSAMEG00000013858 Ailuropoda melanoleuca ENSAMEG00000013858 I 0.767
GFI1 Sus scrofa ENSSSCG00000006902 I 0.767
gfi1 Xenopus tropicalis XB-GENE-960553 I 0.767
GFI1 Pteropus vampyrus ENSPVAG00000006928 I 0.767
Gfi1 Rattus norvegicus ENSRNOG00000002042 D 0.767
gfi1aa Danio rerio ENSDARG00000020746 I 0.767
GFI1 Ochotona princeps ENSOPRG00000001473 I 0.767
ENSNLEG00000010470 Nomascus leucogenys ENSNLEG00000010470 I 0.767
Gfi1 Mus musculus ENSMUSG00000029275 D 0.767
GFI1 Otolemur garnettii ENSOGAG00000027913 I 0.767
GFI1 Canis familiaris ENSCAFG00000020155 I 0.767
GFI1 Bos taurus ENSBTAG00000016723 I 0.767
GFI1 Tursiops truncatus ENSTTRG00000000082 I 0.767
Myotis_brandtii_GFI1B_10010118 Myotis brandtii Myotis_brandtii_GFI1B_10010118 I 0.766
GFI1B Cavia porcellus ENSCPOG00000026928 I 0.765
Pvit_00259 Pogona vitticeps Pvit_00259 I 0.765
NEMVEDRAFT_v1g182742 Nematostella vectensis NEMVEDRAFT_v1g182742 I 0.765
Cmyd_10004881 Chelonia mydas Cmyd_10004881 I 0.765
GFI1 Cavia porcellus ENSCPOG00000011727 I 0.764
ENSBTAP00000022231-D1 Bos grunniens ENSBTAP00000022231-D1 I 0.763
gfi1aa Takifugu rubripes ENSTRUG00000004744 I 0.763
GFI1B Procavia capensis ENSPCAG00000012329 I 0.763
GFI1B Ornithorhynchus anatinus ENSOANG00000014723 I 0.763
ENSP00000399719 Macaca fascicularis ENSP00000399719 I 0.763
GFI1B Loxodonta africana ENSLAFG00000022367 I 0.762
gfi1aa Gasterosteus aculeatus ENSGACG00000015674 I 0.759
ENSPFOG00000017327 Poecilia formosa ENSPFOG00000017327 I 0.759
gfi1aa Oryzias latipes ENSORLG00000005060 I 0.759
ENSONIG00000010573 Oreochromis niloticus ENSONIG00000010573 I 0.759
ENSXMAG00000009274 Xiphophorus maculatus ENSXMAG00000009274 I 0.759
ENSGMOG00000017295 Gadus morhua ENSGMOG00000017295 I 0.757