CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MLOC_57613
(
Hordeum vulgare
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
MLOC_57613
T123606_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SGR5
M06805_2.00
Arabidopsis thaliana
WTTTTGTCTTWTHYD
HRDAWAAGACAAAAW
Dap-seq
OMalley et al.(2016)
SGR5_col_a
0.759
0.884
SGR5
M06806_2.00
Arabidopsis thaliana
WTTTGTCTYWWHBNN
NNVDWWRAGACAAAW
Dap-seq
OMalley et al.(2016)
SGR5_colamp_a
0.759
0.884
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
MLOC_57613.3
C2H2 ZF
143
164
WACSRCSKAYAVHSDYKAHLKT
MLOC_57613.3
C2H2 ZF
164
190
TCGTRGHSCDCGRVFSRVESFIEHQDT
MLOC_57613.5
C2H2 ZF
108
129
WACSRCSKAYAVHSDYKAHLKT
MLOC_57613.5
C2H2 ZF
129
155
TCGTRGHSCDCGRVFSRVESFIEHQDT
Links
Other
C2H2 ZF
family TFs
Other
Hordeum vulgare
TFs
97 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy