NEMVEDRAFT_v1g25267 (Nematostella vectensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 NEMVEDRAFT_v1g25267 T124244_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
opa
M03668_2.00
Drosophila melanogaster
BVCCCCCCRYNGHB

VDCNRYGGGGGGBV
SELEX
Nitta et al.(2015)
opa_1
0.766 0.880
opa
M05861_2.00
Drosophila melanogaster
VCCCCCCRYNGNK

MNCNRYGGGGGGB
SMiLE-seq
Isakova et al.(2017)
Opa
0.766 0.880
opa
M06468_2.00
Drosophila melanogaster
GMCCCCCCGCDG

CHGCGGGGGGKC
B1H
Mathelier et al.(2014)
MA0456.1
0.766 0.880
opa
M06062_2.00
Drosophila melanogaster
GMCCCCCCRCDG

CHGYGGGGGGKC
B1H
Zhu et al.(2011)
opa_NAR_FBgn0003002
0.766 0.880
opa
M06063_2.00
Drosophila melanogaster
MKVMMCCCCMCYR

YRGKGGGGKKBMK
B1H
Zhu et al.(2011)
Opa_SANGER_5_FBgn0003002
0.766 0.880
ref-2
M00621_2.00
Caenorhabditis elegans
CMYRSNGNBH

DVNCNSYRKG
PBM
Narasimhan et al.(2015)
pTH9089
0.761 0.717
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EDO35943 C2H2 ZF 61 88
EDO35943 C2H2 ZF 94 118
EDO35943 C2H2 ZF 124 148
EDO35943 C2H2 ZF 154 178

Links

Other C2H2 ZF family TFs
Other Nematostella vectensis TFs

Invalid Input OrderBy

64 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action