OB01G16060 (Oryza brachyantha)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 OB01G16060 T124561_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
IDD5
M06807_2.00
Arabidopsis thaliana
DNTTTTGTCKTTTTSYD

HRSAAAAMGACAAAANH
Dap-seq
OMalley et al.(2016)
IDD5_colamp_a
0.764 0.930
IDD5
M06808_2.00
Arabidopsis thaliana
WTTTTGTCKTTTWSYD

HRSWAAAMGACAAAAW
Dap-seq
OMalley et al.(2016)
IDD5_col
0.764 0.930
AT1G14580
M06797_2.00
Arabidopsis thaliana
NNNWWTTTTGTCKTTTWSYD

HRSWAAAMGACAAAAWWNNN
Dap-seq
OMalley et al.(2016)
At1g14580_col_a
0.764 0.884
AT1G14580
M06798_2.00
Arabidopsis thaliana
NNTTTTGTCKTTTWSYD

HRSWAAAMGACAAAANN
Dap-seq
OMalley et al.(2016)
At1g14580_colamp_a
0.764 0.884
IDD1
M06824_2.00
Arabidopsis thaliana
DNTTTTGTCKTTTWBYD

HRVWAAAMGACAAAANH
Dap-seq
OMalley et al.(2016)
At5g66730_colamp_a
0.759 0.884
IDD1
M06825_2.00
Arabidopsis thaliana
WDTTTTGTCKTTTWNYD

HRNWAAAMGACAAAAHW
Dap-seq
OMalley et al.(2016)
At5g66730_col
0.759 0.884
IDD4
M06809_2.00
Arabidopsis thaliana
WWTTTTGTCKTTTWSYD

HRSWAAAMGACAAAAWW
Dap-seq
OMalley et al.(2016)
IDD4_col_a
0.759 0.860
IDD7
M06803_2.00
Arabidopsis thaliana
NDDTTTTGTCKTTTWBYD

HRVWAAAMGACAAAAHHN
Dap-seq
OMalley et al.(2016)
IDD7_col_a
0.759 0.860
MGP
M06795_2.00
Arabidopsis thaliana
HNHDWTTTTGTCKTTTWNYD

HRNWAAAMGACAAAAWHDND
Dap-seq
OMalley et al.(2016)
MGP_col_a
0.759 0.860
MGP
M06796_2.00
Arabidopsis thaliana
NNDTTTTGTCKTTTWBYD

HRVWAAAMGACAAAAHNN
Dap-seq
OMalley et al.(2016)
MGP_colamp_a
0.759 0.860
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OB01G16060.1 C2H2 ZF 151 172
OB01G16060.1 C2H2 ZF 171 197

Links

Other C2H2 ZF family TFs
Other Oryza brachyantha TFs

472 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BGIOSGA037734 Oryza indica BGIOSGA037734 N 0.000
Sb08g020320 Sorghum bicolor Sb08g020320 N 0.000
Sb08g020300 Sorghum bicolor Sb08g020300 N 0.000
Sb08g020290 Sorghum bicolor Sb08g020290 N 0.000
Sb08g020280 Sorghum bicolor Sb08g020280 N 0.000
ORUFI12G19910 Oryza rufipogon ORUFI12G19910 N 0.000
ORUFI12G19880 Oryza rufipogon ORUFI12G19880 N 0.000
OPUNC12G16280 Oryza punctata OPUNC12G16280 N 0.000
ONIVA12G16610 Oryza nivara ONIVA12G16610 N 0.000
ONIVA12G16580 Oryza nivara ONIVA12G16580 N 0.000
OGLUM12G19530 Oryza glumaepatula OGLUM12G19530 N 0.000
OGLUM12G19510 Oryza glumaepatula OGLUM12G19510 N 0.000
OBART12G18000 Oryza barthii OBART12G18000 N 0.000
OBART12G17960 Oryza barthii OBART12G17960 N 0.000
GRMZM2G165090 Zea mays GRMZM2G165090 N 0.000
GRMZM2G018472 Zea mays GRMZM2G018472 N 0.000
Si024602m.g Setaria italica Si024602m.g N 0.000