OB01G47470 (Oryza brachyantha)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 OB01G47470 T124563_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
STOP1
M06801_2.00
Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY

RRGKDDYAHCTGGKGVAGG
Dap-seq
OMalley et al.(2016)
STOP1_col_a
0.803 0.929
STOP1
M06802_2.00
Arabidopsis thaliana
RCCTNCMCCRGWWRN

NYWWCYGGKGNAGGY
Dap-seq
OMalley et al.(2016)
STOP1_colamp_a
0.803 0.929
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OB01G47470.1 C2H2 ZF 368 390
OB01G47470.1 C2H2 ZF 391 416

Links

Other C2H2 ZF family TFs
Other Oryza brachyantha TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
A1O7_06007 Cladophialophora yegresii A1O7_06007 N 0.000
G647_06531 Cladophialophora carrionii G647_06531 N 0.000