OB02G34800 (Oryza brachyantha)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 OB02G34800 T124572_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
IDD1
M06824_2.00
Arabidopsis thaliana
DNTTTTGTCKTTTWBYD

HRVWAAAMGACAAAANH
Dap-seq
OMalley et al.(2016)
At5g66730_colamp_a
0.822 0.953
IDD1
M06825_2.00
Arabidopsis thaliana
WDTTTTGTCKTTTWNYD

HRNWAAAMGACAAAAHW
Dap-seq
OMalley et al.(2016)
At5g66730_col
0.822 0.953
IDD5
M06807_2.00
Arabidopsis thaliana
DNTTTTGTCKTTTTSYD

HRSAAAAMGACAAAANH
Dap-seq
OMalley et al.(2016)
IDD5_colamp_a
0.794 0.953
IDD5
M06808_2.00
Arabidopsis thaliana
WTTTTGTCKTTTWSYD

HRSWAAAMGACAAAAW
Dap-seq
OMalley et al.(2016)
IDD5_col
0.794 0.953
AT1G14580
M06797_2.00
Arabidopsis thaliana
NNNWWTTTTGTCKTTTWSYD

HRSWAAAMGACAAAAWWNNN
Dap-seq
OMalley et al.(2016)
At1g14580_col_a
0.794 0.907
AT1G14580
M06798_2.00
Arabidopsis thaliana
NNTTTTGTCKTTTWSYD

HRSWAAAMGACAAAANN
Dap-seq
OMalley et al.(2016)
At1g14580_colamp_a
0.794 0.907
IDD4
M06809_2.00
Arabidopsis thaliana
WWTTTTGTCKTTTWSYD

HRSWAAAMGACAAAAWW
Dap-seq
OMalley et al.(2016)
IDD4_col_a
0.788 0.884
IDD7
M06803_2.00
Arabidopsis thaliana
NDDTTTTGTCKTTTWBYD

HRVWAAAMGACAAAAHHN
Dap-seq
OMalley et al.(2016)
IDD7_col_a
0.788 0.884
MGP
M06795_2.00
Arabidopsis thaliana
HNHDWTTTTGTCKTTTWNYD

HRNWAAAMGACAAAAWHDND
Dap-seq
OMalley et al.(2016)
MGP_col_a
0.788 0.884
MGP
M06796_2.00
Arabidopsis thaliana
NNDTTTTGTCKTTTWBYD

HRVWAAAMGACAAAAHNN
Dap-seq
OMalley et al.(2016)
MGP_colamp_a
0.788 0.884
NUC
M06822_2.00
Arabidopsis thaliana
NNNNNTTTTGTCKTYTWBYD

HRVWARAMGACAAAANNNNN
Dap-seq
OMalley et al.(2016)
NUC_col_a
0.765 0.860
NUC
M06823_2.00
Arabidopsis thaliana
NDTTTTGTCGTYTWNYD

HRNWARACGACAAAAHN
Dap-seq
OMalley et al.(2016)
NUC_colamp_a
0.765 0.860
JKD
M06818_2.00
Arabidopsis thaliana
HHNWWTTTTGTCKTTTWBYD

HRVWAAAMGACAAAAWWNDD
Dap-seq
OMalley et al.(2016)
JKD_col_a
0.759 0.860
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OB02G34800.1 C2H2 ZF 173 194
OB02G34800.1 C2H2 ZF 193 219

Links

Other C2H2 ZF family TFs
Other Oryza brachyantha TFs

665 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
HIF1A Homo sapiens ENSG00000100644 D 0.000
Hif1a Mus musculus ENSMUSG00000021109 D 0.000
HIF1A Anolis carolinensis ENSACAG00000016205 I 0.000
ENSTNIG00000019821 Tetraodon nigroviridis ENSTNIG00000019821 I 0.000
Aan_R001655 Calypte anna Aan_R001655 I 0.000
Afo_R010338 Aptenodytes forsteri Afo_R010338 I 0.000
Alligator_sinensis_CCG014229.1 Alligator sinensis Alligator_sinensis_CCG014229.1 I 0.000
Brh_R012268 Buceros rhinoceros Brh_R012268 I 0.000
Cmyd_10008490 Chelonia mydas Cmyd_10008490 I 0.000
Gfo_R006824 Geospiza fortis Gfo_R006824 I 0.000
Ogr06281 Ophisaurus gracilis Ogr06281 I 0.000
Tal_R011146 Tyto alba Tal_R011146 I 0.000
AAI26006 Xenopus laevis AAI26006 I 0.000
AAO72733 Xenopus laevis AAO72733 I 0.000
ABF71072 Xenopus laevis ABF71072 I 0.000
HIF1A Taeniopygia guttata ENSTGUG00000012978 I 0.000
ENSSHAG00000012129 Sarcophilus harrisii ENSSHAG00000012129 I 0.000
ENSAMXG00000019342 Astyanax mexicanus ENSAMXG00000019342 I 0.000
ENSAPLG00000002715 Anas platyrhynchos ENSAPLG00000002715 I 0.000
ENSFALG00000003396 Ficedula albicollis ENSFALG00000003396 I 0.000
HIF1A Gallus gallus ENSGALG00000011870 I 0.000
ENSLOCG00000010146 Lepisosteus oculatus ENSLOCG00000010146 I 0.000
HIF1A Meleagris gallopavo ENSMGAG00000013552 I 0.000
HIF1A Monodelphis domestica ENSMODG00000008760 I 0.000
ENSORLG00000015698 Oryzias latipes ENSORLG00000015698 I 0.000
ENSPSIG00000010467 Pelodiscus sinensis ENSPSIG00000010467 I 0.000
hif1a Xenopus tropicalis XB-GENE-946622 I 0.000
ENSONIG00000020112 Oreochromis niloticus ENSONIG00000020112 N 0.000
epas1b Danio rerio ENSDARG00000057671 N 0.000
ENSPMAG00000000126 Petromyzon marinus ENSPMAG00000000126 N 0.000