OGLUM05G20400 (Oryza glumaepatula)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 OGLUM05G20400 T124734_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ZAT7
M01855_2.00
Arabidopsis thaliana
NVDBRCACTNNNN

NNNNAGTGYVHBN
PBM
Weirauch et al.(2014)
pTH7540
0.773 0.783
AT3G46070
M06813_2.00
Arabidopsis thaliana
HYHHYHTCACTYHHH

DDDRAGTGADRDDRD
Dap-seq
OMalley et al.(2016)
AT3G46070_col_a
0.761 0.739
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OGLUM05G20400.1 C2H2 ZF 33 55
OGLUM05G20400.1 C2H2 ZF 90 112

Links

Other C2H2 ZF family TFs
Other Oryza glumaepatula TFs

103 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AT3G46070 Arabidopsis thaliana AT3G46070 D 0.761
ZAT7 Arabidopsis thaliana AT3G46090 D 0.773
Solyc06g075780.1 Solanum lycopersicum Solyc06g075780.1 I 0.757
Solyc11g073060.1 Solanum lycopersicum Solyc11g073060.1 I 0.756
TRAES3BF127400030CFD_g Triticum aestivum TRAES3BF127400030CFD_g I 0.769
Traes_5BL_3B50B6963 Triticum aestivum Traes_5BL_3B50B6963 I 0.761
Traes_5BL_8DB8274DB1 Triticum aestivum Traes_5BL_8DB8274DB1 I 0.757
Traes_5BL_B038BE0A3 Triticum aestivum Traes_5BL_B038BE0A3 I 0.763
Traes_5BL_BB99746DD Triticum aestivum Traes_5BL_BB99746DD I 0.756
Traes_5DL_4B4927090 Triticum aestivum Traes_5DL_4B4927090 I 0.757
Traes_5DL_50E35B4F3 Triticum aestivum Traes_5DL_50E35B4F3 I 0.757
Traes_5DL_9D713AD9C Triticum aestivum Traes_5DL_9D713AD9C I 0.761
Si037672m.g Setaria italica Si037672m.g I 0.757
Si037251m.g Setaria italica Si037251m.g I 0.763
Si027432m.g Setaria italica Si027432m.g I 0.772
OS05G0460900 Oryza sativa OS05G0460900 I 0.827
PGSC0003DMG401030312 Solanum tuberosum PGSC0003DMG401030312 I 0.757
Sb01g003280 Sorghum bicolor Sb01g003280 I 0.757
Sb03g039270 Sorghum bicolor Sb03g039270 I 0.769
Sb05g027450 Sorghum bicolor Sb05g027450 I 0.777
Sb10g031270 Sorghum bicolor Sb10g031270 I 0.756
scaffold_501490.1 Arabidopsis lyrata scaffold_501490.1 I 0.759
Si003051m.g Setaria italica Si003051m.g I 0.768
Si008395m.g Setaria italica Si008395m.g I 0.756
Si026973m.g Setaria italica Si026973m.g I 0.772
Traes_5DL_F269EF70D Triticum aestivum Traes_5DL_F269EF70D I 0.761
TRIUR3_12166 Triticum urartu TRIUR3_12166 I 0.763
TRIUR3_15911 Triticum urartu TRIUR3_15911 I 0.763
Pavir.Hb00056 Panicum virgatum Pavir.Hb00056 I 0.772
Pavir.Ia00291 Panicum virgatum Pavir.Ia00291 I 0.763
Pavir.Ia00294 Panicum virgatum Pavir.Ia00294 I 0.757
Pavir.Ib04509 Panicum virgatum Pavir.Ib04509 I 0.757
Pavir.J00893 Panicum virgatum Pavir.J00893 I 0.763
Pavir.J03079 Panicum virgatum Pavir.J03079 I 0.767
Pavir.J04850 Panicum virgatum Pavir.J04850 I 0.756
Pavir.J14296 Panicum virgatum Pavir.J14296 I 0.772
Pavir.J14338 Panicum virgatum Pavir.J14338 I 0.769
Pavir.J30713 Panicum virgatum Pavir.J30713 I 0.773
Pavir.Hb00003 Panicum virgatum Pavir.Hb00003 I 0.772
Pavir.Ha00194 Panicum virgatum Pavir.Ha00194 I 0.772
Bostr.18473s0333 Boechera stricta Bostr.18473s0333 I 0.773
Cagra.7309s0001 Capsella grandiflora Cagra.7309s0001 I 0.773
Cagra.7309s0002 Capsella grandiflora Cagra.7309s0002 I 0.762
Carubv10018142m.g Capsella rubella Carubv10018142m.g I 0.773
Carubv10018774m.g Capsella rubella Carubv10018774m.g I 0.762
Eucgr.B02398 Eucalyptus grandis Eucgr.B02398 I 0.757
Pavir.Da00814 Panicum virgatum Pavir.Da00814 I 0.773
Pavir.Da00815 Panicum virgatum Pavir.Da00815 I 0.773
Pavir.Da01563 Panicum virgatum Pavir.Da01563 I 0.772
Pavir.Eb03660 Panicum virgatum Pavir.Eb03660 I 0.769
Thhalv10002839m.g Eutrema salsugineum Thhalv10002839m.g I 0.763
OS03G0820400 Oryza sativa OS03G0820400 I 0.757
ZAT8 Arabidopsis thaliana AT3G46080 I 0.773
GRMZM2G002815 Zea mays GRMZM2G002815 I 0.787
GRMZM2G061626 Zea mays GRMZM2G061626 I 0.758
GRMZM2G112799 Zea mays GRMZM2G112799 I 0.769
GRMZM2G338056 Zea mays GRMZM2G338056 I 0.772
GRMZM2G376061 Zea mays GRMZM2G376061 I 0.769
GSMUA_Achr10G13530_001 Musa acuminata GSMUA_Achr10G13530_001 I 0.761
GSMUA_Achr11G02250_001 Musa acuminata GSMUA_Achr11G02250_001 I 0.756
GSMUA_Achr11G21920_001 Musa acuminata GSMUA_Achr11G21920_001 I 0.756
GSMUA_Achr1G06720_001 Musa acuminata GSMUA_Achr1G06720_001 I 0.756
LPERR01G31500 Leersia perrieri LPERR01G31500 I 0.769
GRMZM2G002805 Zea mays GRMZM2G002805 I 0.758
fgenesh2_kg.5__981__AT3G46090.1 Arabidopsis lyrata fgenesh2_kg.5__981__AT3G46090.1 I 0.773
F775_18608 Aegilops tauschii F775_18608 I 0.757
BGIOSGA004768 Oryza indica BGIOSGA004768 I 0.770
BGIOSGA013832 Oryza indica BGIOSGA013832 I 0.757
Bo1g067420 Brassica oleracea Bo1g067420 I 0.762
Bra019477 Brassica rapa Bra019477 I 0.762
BRADI1G03770 Brachypodium distachyon BRADI1G03770 I 0.761
BRADI1G03780 Brachypodium distachyon BRADI1G03780 I 0.763
BRADI1G03790 Brachypodium distachyon BRADI1G03790 I 0.757
BRADI2G23160 Brachypodium distachyon BRADI2G23160 I 0.772
BRADI2G54500 Brachypodium distachyon BRADI2G54500 I 0.769
F775_17661 Aegilops tauschii F775_17661 I 0.763
GSMUA_Achr10G06730_001 Musa acuminata GSMUA_Achr10G06730_001 I 0.756
LPERR03G33240 Leersia perrieri LPERR03G33240 I 0.757
ONIVA01G41740 Oryza nivara ONIVA01G41740 I 0.770
ONIVA03G40720 Oryza nivara ONIVA03G40720 I 0.757
ONIVA05G20190 Oryza nivara ONIVA05G20190 I 0.827
OPUNC01G35440 Oryza punctata OPUNC01G35440 I 0.770
OPUNC01G35470 Oryza punctata OPUNC01G35470 I 0.770
OPUNC05G16930 Oryza punctata OPUNC05G16930 I 0.779
OPUNC05G16960 Oryza punctata OPUNC05G16960 I 0.779
ORGLA01G0304700 Oryza glaberrima ORGLA01G0304700 I 0.770
ORGLA03G0358200 Oryza glaberrima ORGLA03G0358200 I 0.757
ORGLA05G0167500 Oryza glaberrima ORGLA05G0167500 I 0.827
ORUFI05G20520 Oryza rufipogon ORUFI05G20520 I 0.827
OMERI05G16850 Oryza meridionalis OMERI05G16850 I 0.803
OMERI03G35880 Oryza meridionalis OMERI03G35880 I 0.757
MLOC_14920 Hordeum vulgare MLOC_14920 I 0.763
MLOC_63032 Hordeum vulgare MLOC_63032 I 0.757
MLOC_67028 Hordeum vulgare MLOC_67028 I 0.763
OB03G46010 Oryza brachyantha OB03G46010 I 0.757
OBART03G39050 Oryza barthii OBART03G39050 I 0.757
OS01G0839100 Oryza sativa OS01G0839100 I 0.770
OBART05G19310 Oryza barthii OBART05G19310 I 0.827
OGLUM01G40530 Oryza glumaepatula OGLUM01G40530 I 0.770
OGLUM03G38910 Oryza glumaepatula OGLUM03G38910 I 0.757
OMERI01G33710 Oryza meridionalis OMERI01G33710 I 0.770
Traes_5BL_56E52A2FC Triticum aestivum Traes_5BL_56E52A2FC N 0.761
TRIUR3_01057 Triticum urartu TRIUR3_01057 N 0.758