ORGLA01G0304300 (Oryza glaberrima)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ORGLA01G0304300 T125066_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT5G04390
M01857_2.00
Arabidopsis thaliana
NNHRSWN

NWSYDNN
PBM
Weirauch et al.(2014)
pTH7158
0.788 0.783
AT5G04390
M06819_2.00
Arabidopsis thaliana
HHHHWHCACTN

NAGTGDWDDDD
Dap-seq
OMalley et al.(2016)
At5g04390_col200_a
0.788 0.783
AT5G03510
M00860_2.00
Arabidopsis thaliana
NNHRSWN

NWSYDNN
PBM
Franco-Zorrilla et al.(2014)
ZAT14
0.787 0.717
AT3G53600
M01856_2.00
Arabidopsis thaliana
NNHASWN

NWSTDNN
PBM
Weirauch et al.(2014)
pTH7188
0.778 0.739
AT3G53600
M00858_2.00
Arabidopsis thaliana
NNNNRSWN

NWSYNNNN
PBM
Franco-Zorrilla et al.(2014)
ZAT18
0.778 0.739
ZAT1
M01167_2.00
Arabidopsis thaliana
NHRCTNN

NNAGYDN
PBM
Lambert et al.(2019)
pTH10246
0.771 0.674
ZAT7
M01855_2.00
Arabidopsis thaliana
NVDBRCACTNNNN

NNNNAGTGYVHBN
PBM
Weirauch et al.(2014)
pTH7540
0.768 0.761
AT3G46070
M06813_2.00
Arabidopsis thaliana
HYHHYHTCACTYHHH

DDDRAGTGADRDDRD
Dap-seq
OMalley et al.(2016)
AT3G46070_col_a
0.760 0.804
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ORGLA01G0304300.1 C2H2 ZF 59 81
ORGLA01G0304300.1 C2H2 ZF 122 144

Links

Other C2H2 ZF family TFs
Other Oryza glaberrima TFs

377 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ACEP16058 Atta cephalotes ACEP16058 N 0.000
augustus_masked-nMf.1.1.scaf40912-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf40912-processed-gene-0.0 N 0.000
Brh_R013163 Buceros rhinoceros Brh_R013163 I 0.000
BTMF_0001772901 Brugia timori BTMF_0001772901 N 0.000
CJA31660 Caenorhabditis japonica CJA31660 N 0.000
DILT_0001799701 Diphyllobothrium latum DILT_0001799701 N 0.000
EEL_0001013401 Elaeophora elaphi EEL_0001013401 N 0.000
ENSACAG00000001033 Anolis carolinensis ENSACAG00000001033 I 0.000
ENSDNOG00000008614 Dasypus novemcinctus ENSDNOG00000008614 N 0.000
ENSOARG00000011096 Ovis aries ENSOARG00000011096 N 0.000
ENSTGUG00000007802 Taeniopygia guttata ENSTGUG00000007802 I 0.000
ENSTGUG00000013956 Taeniopygia guttata ENSTGUG00000013956 N 0.000
EVEC_0000447801 Enterobius vermicularis EVEC_0000447801 N 0.000
Hsal_09270--XP_394607.3_APIME Harpegnathos saltator Hsal_09270--XP_394607.3_APIME N 0.000
LOAG_18576 Loa loa LOAG_18576 N 0.000
Minc16694 Meloidogyne incognita Minc16694 N 0.000
nDi.2.2.2.g08784 Dirofilaria immitis nDi.2.2.2.g08784 N 0.000
NEMVEDRAFT_v1g200081 Nematostella vectensis NEMVEDRAFT_v1g200081 N 0.000
nOo.2.0.1.g07550 Onchocerca ochengi nOo.2.0.1.g07550 N 0.000
nOo.2.0.1.g12774 Onchocerca ochengi nOo.2.0.1.g12774 N 0.000
SCUD_0001668701 Schistosoma curassoni SCUD_0001668701 I 0.000
SMRZ_0000901601 Schistosoma margrebowiei SMRZ_0000901601 I 0.000
SROB_0001443501 Schistosoma rodhaini SROB_0001443501 N 0.000
Tal_R008745 Tyto alba Tal_R008745 N 0.000
TCLT_0000604201 Thelazia callipaeda TCLT_0000604201 N 0.000
TCNE_0000641501 Toxocara canis TCNE_0000641501 N 0.000
WUBG_11141 Wuchereria bancrofti WUBG_11141 N 0.000