OS04G0552700 (Oryza sativa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 OS04G0552700 T125224_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ZAT4
M01168_2.00
Arabidopsis thaliana
NNHRSTN

NASYDNN
PBM
Lambert et al.(2019)
pTH11142
0.786 0.844
ZAT9
M06817_2.00
Arabidopsis thaliana
YTACTWHH

DDWAGTAR
Dap-seq
OMalley et al.(2016)
At3g60580_col_a
0.786 0.822
ZAT1
M01167_2.00
Arabidopsis thaliana
NHRCTNN

NNAGYDN
PBM
Lambert et al.(2019)
pTH10246
0.785 0.800
AZF2
M01854_2.00
Arabidopsis thaliana
NASTRNN

NNYASTN
PBM
Weirauch et al.(2014)
pTH8258
0.769 0.667
AT5G03510
M00860_2.00
Arabidopsis thaliana
NNHRSWN

NWSYDNN
PBM
Franco-Zorrilla et al.(2014)
ZAT14
0.765 0.667
AT5G04390
M01857_2.00
Arabidopsis thaliana
NNHRSWN

NWSYDNN
PBM
Weirauch et al.(2014)
pTH7158
0.764 0.644
AT5G04390
M06819_2.00
Arabidopsis thaliana
HHHHWHCACTN

NAGTGDWDDDD
Dap-seq
OMalley et al.(2016)
At5g04390_col200_a
0.764 0.644
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OS04T0552700-01 C2H2 ZF 174 196
OS04T0552700-01 C2H2 ZF 238 259

Links

Other C2H2 ZF family TFs
Other Oryza sativa TFs

166 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
OPUNC04G18700 Oryza punctata OPUNC04G18700 I 0.827
ONIVA04G19260 Oryza nivara ONIVA04G19260 I 0.827
OBART04G21020 Oryza barthii OBART04G21020 I 0.827
OMERI04G17450 Oryza meridionalis OMERI04G17450 I 0.827
ORGLA04G0180800 Oryza glaberrima ORGLA04G0180800 I 0.827
ORUFI04G22610 Oryza rufipogon ORUFI04G22610 I 0.827
BGIOSGA016894 Oryza indica BGIOSGA016894 I 0.827
OB04G28040 Oryza brachyantha OB04G28040 I 0.821
OLONG_016061 Oryza longistaminata OLONG_016061 I 0.821
ONIVA02G29150 Oryza nivara ONIVA02G29150 I 0.817
OS02G0659500 Oryza sativa OS02G0659500 I 0.817
ORUFI02G28150 Oryza rufipogon ORUFI02G28150 I 0.817
OBART02G26700 Oryza barthii OBART02G26700 I 0.817
OMERI02G26030 Oryza meridionalis OMERI02G26030 I 0.817
BGIOSGA008755 Oryza indica BGIOSGA008755 I 0.817
OGLUM02G27190 Oryza glumaepatula OGLUM02G27190 I 0.817
ORGLA02G0229600 Oryza glaberrima ORGLA02G0229600 I 0.817
GSMUA_Achr4G26920_001 Musa acuminata GSMUA_Achr4G26920_001 I 0.816
GSMUA_Achr1G01550_001 Musa acuminata GSMUA_Achr1G01550_001 I 0.816
GSMUA_Achr11G21040_001 Musa acuminata GSMUA_Achr11G21040_001 I 0.810
BRADI3G33100 Brachypodium distachyon BRADI3G33100 I 0.810
TRIUR3_29692 Triticum urartu TRIUR3_29692 I 0.806
GSMUA_Achr5G15450_001 Musa acuminata GSMUA_Achr5G15450_001 I 0.806
GRMZM2G170520 Zea mays GRMZM2G170520 I 0.803
Si010615m.g Setaria italica Si010615m.g I 0.803
GSMUA_Achr4G12160_001 Musa acuminata GSMUA_Achr4G12160_001 I 0.792
GSMUA_AchrUn_randomG03030_001 Musa acuminata GSMUA_AchrUn_randomG03030_001 I 0.792
POPTR_0002s14460 Populus trichocarpa POPTR_0002s14460 I 0.792
Lus10009278.g Linum usitatissimum Lus10009278.g I 0.792
Pavir.Ab02618 Panicum virgatum Pavir.Ab02618 I 0.792
cassava19892.m1 Manihot esculenta cassava19892.m1 I 0.792
30174.m008818 Ricinus communis 30174.m008818 I 0.792
SapurV1A.0033s0440 Salix purpurea SapurV1A.0033s0440 I 0.791
Gorai.001G175400 Gossypium raimondii Gorai.001G175400 I 0.786
SapurV1A.0248s0230 Salix purpurea SapurV1A.0248s0230 I 0.786
Thhalv10006508m.g Eutrema salsugineum Thhalv10006508m.g I 0.786
evm.TU.supercontig_2070.1 Carica papaya evm.TU.supercontig_2070.1 I 0.786
Carubv10017660m.g Capsella rubella Carubv10017660m.g I 0.786
Bostr.25993s0262 Boechera stricta Bostr.25993s0262 I 0.786
Bostr.13158s0058 Boechera stricta Bostr.13158s0058 I 0.786
Cagra.0239s0063 Capsella grandiflora Cagra.0239s0063 I 0.786
Cagra.6011s0004 Capsella grandiflora Cagra.6011s0004 I 0.786
VIT_15s0021g02720 Vitis vinifera VIT_15s0021g02720 I 0.786
Carubv10023569m.g Capsella rubella Carubv10023569m.g I 0.786
scaffold_503291.1 Arabidopsis lyrata scaffold_503291.1 I 0.786
Bo8g095300 Brassica oleracea Bo8g095300 I 0.786
Bra003422 Brassica rapa Bra003422 I 0.786
Bra014483 Brassica rapa Bra014483 I 0.786
Bo6g077190 Brassica oleracea Bo6g077190 I 0.786
Bo4g104940 Brassica oleracea Bo4g104940 I 0.786
ZAT4 Arabidopsis thaliana AT2G45120 D 0.786
ZAT9 Arabidopsis thaliana AT3G60580 D 0.786
fgenesh2_kg.4__2705__AT2G45120.1 Arabidopsis lyrata fgenesh2_kg.4__2705__AT2G45120.1 I 0.786
Bra007545 Brassica rapa Bra007545 I 0.786
Eucgr.D02497 Eucalyptus grandis Eucgr.D02497 I 0.785
Gorai.008G106500 Gossypium raimondii Gorai.008G106500 I 0.785
Solyc03g115450.1 Solanum lycopersicum Solyc03g115450.1 I 0.785
PGSC0003DMG400024550 Solanum tuberosum PGSC0003DMG400024550 I 0.785
Gorai.004G164000 Gossypium raimondii Gorai.004G164000 I 0.785
Bostr.5325s0123 Boechera stricta Bostr.5325s0123 I 0.785
ZAT1 Arabidopsis thaliana AT1G02030 D 0.785
Lus10015888.g Linum usitatissimum Lus10015888.g I 0.782
cassava14164.m1 Manihot esculenta cassava14164.m1 I 0.782
PGSC0003DMG400020929 Solanum tuberosum PGSC0003DMG400020929 I 0.780
orange1.1g044606m.g Citrus sinensis orange1.1g044606m.g I 0.776
Ca_23672 Cicer arietinum Ca_23672 I 0.776
MTR_0160s0030 Medicago truncatula MTR_0160s0030 I 0.776
mgf017082m Mimulus guttatus mgf017082m I 0.776
MTR_4g027440 Medicago truncatula MTR_4g027440 I 0.776
Ciclev10020499m.g Citrus clementina Ciclev10020499m.g I 0.776
GLYMA03G03950 Glycine max GLYMA03G03950 I 0.776
GLYMA01G32981 Glycine max GLYMA01G32981 I 0.776
GLYMA01G18606 Glycine max GLYMA01G18606 I 0.776
mgf021094m Mimulus guttatus mgf021094m I 0.775
Eucgr.F02262 Eucalyptus grandis Eucgr.F02262 I 0.774
Thhalv10009894m.g Eutrema salsugineum Thhalv10009894m.g I 0.772
Eucgr.K00165 Eucalyptus grandis Eucgr.K00165 I 0.772
VIT_07s0129g00240 Vitis vinifera VIT_07s0129g00240 I 0.770
VIT_03s0091g00690 Vitis vinifera VIT_03s0091g00690 I 0.770
Solyc12g088390.1 Solanum lycopersicum Solyc12g088390.1 I 0.770
cassava12475.valid.m1 Manihot esculenta cassava12475.valid.m1 I 0.770
MTR_1g018420 Medicago truncatula MTR_1g018420 I 0.770
POPTR_0002s12010 Populus trichocarpa POPTR_0002s12010 I 0.770
30170.m013751 Ricinus communis 30170.m013751 I 0.770
mgf006006m Mimulus guttatus mgf006006m I 0.770
29661.m000908 Ricinus communis 29661.m000908 I 0.770
Eucgr.G01247 Eucalyptus grandis Eucgr.G01247 I 0.769
MTR_3g102980 Medicago truncatula MTR_3g102980 I 0.769
Bo5g113850 Brassica oleracea Bo5g113850 I 0.769
Cagra.6943s0031 Capsella grandiflora Cagra.6943s0031 I 0.769
MTR_1g106730 Medicago truncatula MTR_1g106730 I 0.769
Carubv10014391m.g Capsella rubella Carubv10014391m.g I 0.769
Ciclev10002297m.g Citrus clementina Ciclev10002297m.g I 0.769
Ciclev10029065m.g Citrus clementina Ciclev10029065m.g I 0.769
Gorai.008G020700 Gossypium raimondii Gorai.008G020700 I 0.769
AZF2 Arabidopsis thaliana AT3G19580 D 0.769
SapurV1A.0019s0280 Salix purpurea SapurV1A.0019s0280 I 0.769
SapurV1A.0005s0440 Salix purpurea SapurV1A.0005s0440 I 0.769
orange1.1g038669m.g Citrus sinensis orange1.1g038669m.g I 0.769
SapurV1A.0845s0100 Salix purpurea SapurV1A.0845s0100 I 0.769
Thhalv10021307m.g Eutrema salsugineum Thhalv10021307m.g I 0.769
chr5.CM0200.550.nc Lotus japonicus chr5.CM0200.550.nc I 0.769
chr5.CM0096.480.nc Lotus japonicus chr5.CM0096.480.nc I 0.769
PK10188.1 Cannabis sativa PK10188.1 I 0.769
orange1.1g024499m.g Citrus sinensis orange1.1g024499m.g I 0.769
MDP0000762756 Malus domestica MDP0000762756 I 0.769
Bostr.19424s0704 Boechera stricta Bostr.19424s0704 I 0.769
Gorai.002G132600 Gossypium raimondii Gorai.002G132600 I 0.769
Bo1g113530 Brassica oleracea Bo1g113530 I 0.769
gene02558-v1.0-hybrid Fragaria vesca gene02558-v1.0-hybrid I 0.769
Gorai.010G025200 Gossypium raimondii Gorai.010G025200 I 0.769
Gorai.013G050100 Gossypium raimondii Gorai.013G050100 I 0.769
MDP0000573176 Malus domestica MDP0000573176 I 0.769
MDP0000319225 Malus domestica MDP0000319225 I 0.769
MDP0000198015 Malus domestica MDP0000198015 I 0.769
evm.TU.supercontig_249.7 Carica papaya evm.TU.supercontig_249.7 I 0.769
MLOC_51405 Hordeum vulgare MLOC_51405 I 0.769
POPTR_0009s09250 Populus trichocarpa POPTR_0009s09250 I 0.769
PGSC0003DMG400041467 Solanum tuberosum PGSC0003DMG400041467 I 0.769
PGSC0003DMG400011548 Solanum tuberosum PGSC0003DMG400011548 I 0.769
POPTR_0014s01760 Populus trichocarpa POPTR_0014s01760 I 0.769
PRUPE_ppa009924mg Prunus persica PRUPE_ppa009924mg I 0.769
TCM_007214 Theobroma cacao TCM_007214 I 0.769
Si023013m.g Setaria italica Si023013m.g I 0.769
PRUPE_ppa011060mg Prunus persica PRUPE_ppa011060mg I 0.769
PGSC0003DMG400002383 Solanum tuberosum PGSC0003DMG400002383 I 0.769
OS12G0583700 Oryza sativa OS12G0583700 I 0.769
GLYMA06G04840 Glycine max GLYMA06G04840 I 0.769
GLYMA10G40400 Glycine max GLYMA10G40400 I 0.769
GLYMA14G09760 Glycine max GLYMA14G09760 I 0.769
GLYMA04G04760 Glycine max GLYMA04G04760 I 0.769
OPUNC12G15600 Oryza punctata OPUNC12G15600 I 0.769
BRADI1G14750 Brachypodium distachyon BRADI1G14750 I 0.769
BRADI4G03410 Brachypodium distachyon BRADI4G03410 I 0.769
AZF2 Arabidopsis lyrata fgenesh2_kg.3__2173__AT3G19580.2 I 0.769
TCM_034720 Theobroma cacao TCM_034720 I 0.769
Bra038219 Brassica rapa Bra038219 I 0.769
MLOC_54674 Hordeum vulgare MLOC_54674 I 0.769
28152.m000908 Ricinus communis 28152.m000908 I 0.769
Traes_4BS_FE945D2FC Triticum aestivum Traes_4BS_FE945D2FC I 0.769
Ca_18364 Cicer arietinum Ca_18364 I 0.769
Pm021284 Prunus mume Pm021284 I 0.769
Pm005390 Prunus mume Pm005390 I 0.769
Ca_01586 Cicer arietinum Ca_01586 I 0.769
Ca_05641 Cicer arietinum Ca_05641 I 0.769
cassava43667.valid.m1 Manihot esculenta cassava43667.valid.m1 I 0.769
Bra022436 Brassica rapa Bra022436 I 0.769
GLYMA17G35430 Glycine max GLYMA17G35430 I 0.769
VIT_18s0001g09230 Vitis vinifera VIT_18s0001g09230 I 0.769
cassava35732.valid.m1 Manihot esculenta cassava35732.valid.m1 I 0.769
AT5G03510 Arabidopsis thaliana AT5G03510 D 0.765
cassava15802.m1 Manihot esculenta cassava15802.m1 I 0.764
POPTR_0006s12340 Populus trichocarpa POPTR_0006s12340 I 0.764
AT5G04390 Arabidopsis thaliana AT5G04390 D 0.764
Bo4g195370 Brassica oleracea Bo4g195370 I 0.762
Thhalv10001538m.g Eutrema salsugineum Thhalv10001538m.g I 0.762
PGSC0003DMG400026020 Solanum tuberosum PGSC0003DMG400026020 I 0.762
Bo3g037560 Brassica oleracea Bo3g037560 I 0.762
Solyc01g090840.2 Solanum lycopersicum Solyc01g090840.2 I 0.762
Bra040325 Brassica rapa Bra040325 I 0.762
Bra000372 Brassica rapa Bra000372 I 0.762
mgf021789m Mimulus guttatus mgf021789m I 0.760
LPERR03G21480 Leersia perrieri LPERR03G21480 I 0.759
Eucgr.D02083 Eucalyptus grandis Eucgr.D02083 N 0.759
GSMUA_Achr5G08730_001 Musa acuminata GSMUA_Achr5G08730_001 I 0.759
PGSC0003DMG400028275 Solanum tuberosum PGSC0003DMG400028275 I 0.759