CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PAS_chr4_0202
(
Komagataella pastoris
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
PAS_chr4_0202
T125398_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AZF1
M00039_2.00
Saccharomyces cerevisiae
YNNHNNNNNN
NNNNNNDNNR
PBM
Badis et al.(2008)
AZF1_2102
0.774
0.783
AZF1
M07469_2.00
Saccharomyces cerevisiae
NTTCTTTTN
NAAAAGAAN
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0277.1
0.774
0.783
AZF1
M08542_2.00
Saccharomyces cerevisiae
BTTCTTTTB
VAAAAGAAV
Misc
DeBoer et al.(2011)
YOR113W_499
0.774
0.783
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CAY71428
C2H2 ZF
590
612
HECPHCFKKFTQATHLEVHIRSH
CAY71428
C2H2 ZF
618
640
YACEYCGKRFTQGGNLRTHLRLH
CAY71428
C2H2 ZF
646
668
FECNTCHKKFSRKGNLQAHRLTH
CAY71428
C2H2 ZF
674
699
FVCKLDDCNKTFTQLGNLKAHQNRFH
Links
Other
C2H2 ZF
family TFs
Other
Komagataella pastoris
TFs
21 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy